Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26955

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26950 and AO356_26955 overlap by 4 nucleotidesAO356_26955 and AO356_26960 overlap by 29 nucleotidesAO356_26960 and AO356_26965 are separated by 10 nucleotides AO356_26950: AO356_26950 - ATP-dependent DNA ligase, at 6,135,358 to 6,137,970 _26950 AO356_26955: AO356_26955 - carboxylate--amine ligase, at 6,137,967 to 6,139,130 _26955 AO356_26960: AO356_26960 - SAM-dependent methyltransferase, at 6,139,102 to 6,140,115 _26960 AO356_26965: AO356_26965 - hypothetical protein, at 6,140,126 to 6,141,511 _26965 Position (kb) 6137 6138 6139 6140Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6136.973 kb on + strand, within AO356_26950at 6136.973 kb on + strand, within AO356_26950at 6136.973 kb on + strand, within AO356_26950at 6136.974 kb on - strand, within AO356_26950at 6136.974 kb on - strand, within AO356_26950at 6137.219 kb on + strand, within AO356_26950at 6137.822 kb on + strandat 6137.823 kb on - strandat 6138.474 kb on + strand, within AO356_26955at 6138.474 kb on + strand, within AO356_26955at 6138.475 kb on - strand, within AO356_26955at 6138.475 kb on - strand, within AO356_26955at 6138.632 kb on - strand, within AO356_26955at 6138.787 kb on + strand, within AO356_26955at 6138.788 kb on - strand, within AO356_26955at 6138.929 kb on - strand, within AO356_26955at 6139.093 kb on + strandat 6139.094 kb on - strandat 6139.177 kb on + strandat 6139.268 kb on + strand, within AO356_26960at 6139.355 kb on + strand, within AO356_26960at 6139.355 kb on + strand, within AO356_26960at 6139.355 kb on + strand, within AO356_26960at 6139.356 kb on - strand, within AO356_26960at 6139.478 kb on + strand, within AO356_26960at 6139.731 kb on + strand, within AO356_26960at 6139.732 kb on - strand, within AO356_26960at 6139.754 kb on + strand, within AO356_26960

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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6,136,973 + AO356_26950 0.62 +1.7
6,136,973 + AO356_26950 0.62 +0.4
6,136,973 + AO356_26950 0.62 +0.3
6,136,974 - AO356_26950 0.62 -2.6
6,136,974 - AO356_26950 0.62 -0.8
6,137,219 + AO356_26950 0.71 -1.1
6,137,822 + -0.1
6,137,823 - -1.6
6,138,474 + AO356_26955 0.44 +2.2
6,138,474 + AO356_26955 0.44 -0.9
6,138,475 - AO356_26955 0.44 -2.2
6,138,475 - AO356_26955 0.44 -2.8
6,138,632 - AO356_26955 0.57 +1.2
6,138,787 + AO356_26955 0.70 -1.1
6,138,788 - AO356_26955 0.71 -1.5
6,138,929 - AO356_26955 0.83 -0.1
6,139,093 + +1.1
6,139,094 - +0.8
6,139,177 + -2.4
6,139,268 + AO356_26960 0.16 +1.4
6,139,355 + AO356_26960 0.25 -0.5
6,139,355 + AO356_26960 0.25 -1.6
6,139,355 + AO356_26960 0.25 -0.1
6,139,356 - AO356_26960 0.25 -2.0
6,139,478 + AO356_26960 0.37 -1.1
6,139,731 + AO356_26960 0.62 -0.5
6,139,732 - AO356_26960 0.62 -1.0
6,139,754 + AO356_26960 0.64 +2.9

Or see this region's nucleotide sequence