Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26270 and AO356_26275 are separated by 173 nucleotides AO356_26275 and AO356_26280 are separated by 241 nucleotides AO356_26280 and AO356_26285 overlap by 1 nucleotides
AO356_26270: AO356_26270 - histidine kinase, at 5,950,753 to 5,951,937
_26270
AO356_26275: AO356_26275 - cag pathogenicity island protein Cag5, at 5,952,111 to 5,952,632
_26275
AO356_26280: AO356_26280 - RNA polymerase subunit sigma, at 5,952,874 to 5,953,383
_26280
AO356_26285: AO356_26285 - sugar ABC transporter substrate-binding protein, at 5,953,383 to 5,954,327
_26285
Position (kb) 5952
5953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5951.153 kb on + strand, within AO356_26270 at 5951.154 kb on - strand, within AO356_26270 at 5951.173 kb on + strand, within AO356_26270 at 5951.174 kb on - strand, within AO356_26270 at 5951.174 kb on - strand, within AO356_26270 at 5951.355 kb on - strand, within AO356_26270 at 5952.012 kb on + strand at 5952.012 kb on + strand at 5952.012 kb on + strand at 5952.013 kb on - strand at 5952.028 kb on + strand at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.310 kb on - strand, within AO356_26275 at 5952.382 kb on - strand, within AO356_26275 at 5952.477 kb on + strand, within AO356_26275 at 5952.478 kb on - strand, within AO356_26275 at 5952.478 kb on - strand, within AO356_26275 at 5952.479 kb on + strand, within AO356_26275 at 5952.480 kb on - strand, within AO356_26275 at 5952.531 kb on + strand, within AO356_26275 at 5952.543 kb on + strand, within AO356_26275 at 5952.543 kb on + strand, within AO356_26275 at 5952.786 kb on + strand at 5952.888 kb on + strand at 5952.888 kb on + strand at 5952.888 kb on + strand at 5952.889 kb on - strand at 5953.064 kb on - strand, within AO356_26280 at 5953.102 kb on + strand, within AO356_26280 at 5953.129 kb on + strand, within AO356_26280 at 5953.130 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.339 kb on + strand at 5953.339 kb on + strand at 5953.354 kb on + strand at 5953.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 5,951,153 + AO356_26270 0.34 -1.9 5,951,154 - AO356_26270 0.34 -0.3 5,951,173 + AO356_26270 0.35 +0.8 5,951,174 - AO356_26270 0.36 +1.5 5,951,174 - AO356_26270 0.36 -1.0 5,951,355 - AO356_26270 0.51 -0.2 5,952,012 + -0.8 5,952,012 + -1.1 5,952,012 + -0.9 5,952,013 - -0.7 5,952,028 + +1.7 5,952,189 + AO356_26275 0.15 -0.2 5,952,189 + AO356_26275 0.15 +0.1 5,952,189 + AO356_26275 0.15 +0.1 5,952,189 + AO356_26275 0.15 +0.6 5,952,189 + AO356_26275 0.15 -0.8 5,952,190 - AO356_26275 0.15 -0.7 5,952,190 - AO356_26275 0.15 -0.1 5,952,190 - AO356_26275 0.15 -0.4 5,952,190 - AO356_26275 0.15 -0.3 5,952,190 - AO356_26275 0.15 +1.4 5,952,310 - AO356_26275 0.38 +0.5 5,952,382 - AO356_26275 0.52 +2.6 5,952,477 + AO356_26275 0.70 -1.9 5,952,478 - AO356_26275 0.70 -0.2 5,952,478 - AO356_26275 0.70 -1.0 5,952,479 + AO356_26275 0.70 +0.7 5,952,480 - AO356_26275 0.71 +0.2 5,952,531 + AO356_26275 0.80 +0.1 5,952,543 + AO356_26275 0.83 +0.2 5,952,543 + AO356_26275 0.83 -0.6 5,952,786 + -0.0 5,952,888 + +0.3 5,952,888 + -0.9 5,952,888 + -0.6 5,952,889 - -0.3 5,953,064 - AO356_26280 0.37 +1.1 5,953,102 + AO356_26280 0.45 -1.4 5,953,129 + AO356_26280 0.50 -0.6 5,953,130 - AO356_26280 0.50 +0.5 5,953,134 - AO356_26280 0.51 +0.2 5,953,134 - AO356_26280 0.51 -1.4 5,953,134 - AO356_26280 0.51 +1.2 5,953,339 + +0.2 5,953,339 + +0.1 5,953,354 + -2.2 5,953,355 - -2.8
Or see this region's nucleotide sequence