Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25160 and AO356_25165 are separated by 10 nucleotides AO356_25165 and AO356_25170 overlap by 7 nucleotides AO356_25170 and AO356_25175 overlap by 1 nucleotides
AO356_25160: AO356_25160 - protease, at 5,693,893 to 5,694,888
_25160
AO356_25165: AO356_25165 - protease, at 5,694,899 to 5,695,789
_25165
AO356_25170: AO356_25170 - lipid carrier protein, at 5,695,783 to 5,696,253
_25170
AO356_25175: AO356_25175 - zinc-binding protein, at 5,696,253 to 5,696,627
_25175
Position (kb) 5694
5695
5696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5693.965 kb on + strand at 5693.965 kb on + strand at 5693.965 kb on + strand at 5694.015 kb on + strand, within AO356_25160 at 5694.016 kb on - strand, within AO356_25160 at 5694.016 kb on - strand, within AO356_25160 at 5694.076 kb on + strand, within AO356_25160 at 5694.077 kb on - strand, within AO356_25160 at 5694.090 kb on + strand, within AO356_25160 at 5694.091 kb on - strand, within AO356_25160 at 5694.095 kb on - strand, within AO356_25160 at 5694.239 kb on + strand, within AO356_25160 at 5694.277 kb on + strand, within AO356_25160 at 5694.434 kb on - strand, within AO356_25160 at 5694.434 kb on - strand, within AO356_25160 at 5694.434 kb on - strand, within AO356_25160 at 5694.551 kb on - strand, within AO356_25160 at 5694.929 kb on + strand at 5694.960 kb on - strand at 5694.995 kb on + strand, within AO356_25165 at 5695.078 kb on + strand, within AO356_25165 at 5695.403 kb on + strand, within AO356_25165 at 5695.403 kb on + strand, within AO356_25165 at 5695.599 kb on - strand, within AO356_25165 at 5695.768 kb on - strand at 5695.768 kb on - strand at 5695.985 kb on - strand, within AO356_25170 at 5695.985 kb on - strand, within AO356_25170 at 5696.101 kb on - strand, within AO356_25170 at 5696.193 kb on - strand, within AO356_25170 at 5696.283 kb on + strand at 5696.283 kb on + strand at 5696.283 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 5,693,965 + -0.8 5,693,965 + -1.3 5,693,965 + -1.3 5,694,015 + AO356_25160 0.12 +1.2 5,694,016 - AO356_25160 0.12 +0.2 5,694,016 - AO356_25160 0.12 -0.0 5,694,076 + AO356_25160 0.18 -0.0 5,694,077 - AO356_25160 0.18 +0.4 5,694,090 + AO356_25160 0.20 -0.7 5,694,091 - AO356_25160 0.20 -1.7 5,694,095 - AO356_25160 0.20 +0.1 5,694,239 + AO356_25160 0.35 -0.1 5,694,277 + AO356_25160 0.39 +2.4 5,694,434 - AO356_25160 0.54 +0.7 5,694,434 - AO356_25160 0.54 -0.8 5,694,434 - AO356_25160 0.54 -2.5 5,694,551 - AO356_25160 0.66 +1.5 5,694,929 + +0.5 5,694,960 - +1.2 5,694,995 + AO356_25165 0.11 -0.2 5,695,078 + AO356_25165 0.20 +0.3 5,695,403 + AO356_25165 0.57 -2.1 5,695,403 + AO356_25165 0.57 -1.5 5,695,599 - AO356_25165 0.79 -2.8 5,695,768 - +1.3 5,695,768 - +1.4 5,695,985 - AO356_25170 0.43 +0.9 5,695,985 - AO356_25170 0.43 -0.4 5,696,101 - AO356_25170 0.68 -0.3 5,696,193 - AO356_25170 0.87 -0.3 5,696,283 + +0.9 5,696,283 + +0.5 5,696,283 + -0.8
Or see this region's nucleotide sequence