Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09735

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09730 and AO356_09735 are separated by 85 nucleotidesAO356_09735 and AO356_09740 overlap by 4 nucleotidesAO356_09740 and AO356_09745 are separated by 577 nucleotides AO356_09730: AO356_09730 - nitrogen regulation protein NR(I), at 2,208,422 to 2,209,858 _09730 AO356_09735: AO356_09735 - transposase, at 2,209,944 to 2,210,780 _09735 AO356_09740: AO356_09740 - transposase, at 2,210,777 to 2,211,079 _09740 AO356_09745: AO356_09745 - hypothetical protein, at 2,211,657 to 2,212,019 _09745 Position (kb) 2209 2210 2211Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2209.225 kb on + strand, within AO356_09730at 2209.225 kb on + strand, within AO356_09730at 2209.226 kb on - strand, within AO356_09730at 2209.226 kb on - strand, within AO356_09730at 2209.226 kb on - strand, within AO356_09730at 2209.345 kb on + strand, within AO356_09730at 2209.345 kb on + strand, within AO356_09730at 2209.463 kb on + strand, within AO356_09730at 2209.463 kb on + strand, within AO356_09730at 2209.464 kb on - strand, within AO356_09730at 2209.783 kb on + strandat 2209.783 kb on + strandat 2209.784 kb on - strandat 2209.784 kb on - strandat 2209.784 kb on - strandat 2209.784 kb on - strandat 2209.784 kb on - strandat 2209.867 kb on + strandat 2209.921 kb on - strandat 2211.140 kb on + strandat 2211.140 kb on + strandat 2211.266 kb on + strandat 2211.267 kb on - strandat 2211.399 kb on + strandat 2211.451 kb on + strandat 2211.452 kb on - strandat 2211.452 kb on - strandat 2211.452 kb on - strandat 2211.456 kb on - strandat 2211.456 kb on - strandat 2211.485 kb on + strandat 2211.485 kb on + strandat 2211.486 kb on - strandat 2211.512 kb on + strandat 2211.512 kb on + strandat 2211.512 kb on + strandat 2211.513 kb on - strandat 2211.552 kb on + strandat 2211.553 kb on - strandat 2211.579 kb on + strandat 2211.579 kb on + strandat 2211.579 kb on + strandat 2211.600 kb on - strandat 2211.658 kb on + strandat 2211.658 kb on + strandat 2211.658 kb on + strandat 2211.658 kb on + strandat 2211.658 kb on + strandat 2211.658 kb on + strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2211.659 kb on - strandat 2211.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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2,209,225 + AO356_09730 0.56 +1.0
2,209,225 + AO356_09730 0.56 -0.5
2,209,226 - AO356_09730 0.56 -0.2
2,209,226 - AO356_09730 0.56 -1.5
2,209,226 - AO356_09730 0.56 -0.3
2,209,345 + AO356_09730 0.64 -3.1
2,209,345 + AO356_09730 0.64 +0.5
2,209,463 + AO356_09730 0.72 +0.3
2,209,463 + AO356_09730 0.72 -2.1
2,209,464 - AO356_09730 0.73 -0.7
2,209,783 + +1.1
2,209,783 + -3.2
2,209,784 - +0.6
2,209,784 - +2.5
2,209,784 - +1.7
2,209,784 - +1.0
2,209,784 - -0.4
2,209,867 + +0.8
2,209,921 - +1.6
2,211,140 + +1.3
2,211,140 + -1.3
2,211,266 + -0.3
2,211,267 - +1.3
2,211,399 + -0.2
2,211,451 + +1.4
2,211,452 - +1.1
2,211,452 - -1.4
2,211,452 - +0.8
2,211,456 - -1.7
2,211,456 - -1.2
2,211,485 + +0.9
2,211,485 + -0.9
2,211,486 - +2.0
2,211,512 + +0.3
2,211,512 + +0.5
2,211,512 + -1.7
2,211,513 - -0.3
2,211,552 + +0.4
2,211,553 - -0.5
2,211,579 + +1.2
2,211,579 + +1.9
2,211,579 + +0.1
2,211,600 - -0.7
2,211,658 + +1.7
2,211,658 + -0.7
2,211,658 + +2.2
2,211,658 + +0.3
2,211,658 + +1.4
2,211,658 + -0.4
2,211,659 - -0.8
2,211,659 - -1.1
2,211,659 - +1.1
2,211,659 - -2.7
2,211,659 - +0.6
2,211,659 - -0.5
2,211,659 - -1.1

Or see this region's nucleotide sequence