Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05850

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05835 and AO356_05840 overlap by 4 nucleotidesAO356_05840 and AO356_05845 are separated by 11 nucleotidesAO356_05845 and AO356_05850 are separated by 3 nucleotidesAO356_05850 and AO356_05855 are separated by 36 nucleotidesAO356_05855 and AO356_05860 are separated by 50 nucleotides AO356_05835: AO356_05835 - baseplate J protein, at 1,294,436 to 1,295,431 _05835 AO356_05840: AO356_05840 - phage baseplate protein, at 1,295,428 to 1,295,760 _05840 AO356_05845: AO356_05845 - baseplate assembly protein, at 1,295,772 to 1,296,383 _05845 AO356_05850: AO356_05850 - hypothetical protein, at 1,296,387 to 1,296,899 _05850 AO356_05855: AO356_05855 - pyocin R2, holin, at 1,296,936 to 1,297,286 _05855 AO356_05860: AO356_05860 - hypothetical protein, at 1,297,337 to 1,297,981 _05860 Position (kb) 1296 1297Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1295.558 kb on + strand, within AO356_05840at 1295.559 kb on - strand, within AO356_05840at 1295.645 kb on + strand, within AO356_05840at 1295.645 kb on + strand, within AO356_05840at 1295.645 kb on + strand, within AO356_05840at 1295.645 kb on + strand, within AO356_05840at 1295.645 kb on + strand, within AO356_05840at 1295.645 kb on + strand, within AO356_05840at 1295.645 kb on + strand, within AO356_05840at 1295.646 kb on - strand, within AO356_05840at 1295.646 kb on - strand, within AO356_05840at 1295.646 kb on - strand, within AO356_05840at 1295.646 kb on - strand, within AO356_05840at 1295.646 kb on - strand, within AO356_05840at 1295.773 kb on + strandat 1295.773 kb on + strandat 1295.774 kb on - strandat 1296.127 kb on - strand, within AO356_05845at 1296.406 kb on + strandat 1296.406 kb on + strandat 1296.406 kb on + strandat 1296.407 kb on - strandat 1296.407 kb on - strandat 1296.407 kb on - strandat 1296.407 kb on - strandat 1296.497 kb on - strand, within AO356_05850at 1296.533 kb on - strand, within AO356_05850at 1296.832 kb on + strand, within AO356_05850at 1296.832 kb on + strand, within AO356_05850at 1296.833 kb on - strand, within AO356_05850at 1296.833 kb on - strand, within AO356_05850at 1296.916 kb on + strandat 1296.916 kb on + strandat 1296.978 kb on + strand, within AO356_05855at 1297.009 kb on + strand, within AO356_05855at 1297.009 kb on + strand, within AO356_05855at 1297.093 kb on + strand, within AO356_05855at 1297.093 kb on + strand, within AO356_05855at 1297.093 kb on + strand, within AO356_05855at 1297.093 kb on + strand, within AO356_05855at 1297.094 kb on - strand, within AO356_05855at 1297.094 kb on - strand, within AO356_05855at 1297.305 kb on + strandat 1297.306 kb on - strandat 1297.319 kb on + strandat 1297.407 kb on + strand, within AO356_05860at 1297.407 kb on + strand, within AO356_05860at 1297.426 kb on + strand, within AO356_05860at 1297.447 kb on + strand, within AO356_05860at 1297.447 kb on + strand, within AO356_05860at 1297.447 kb on + strand, within AO356_05860at 1297.447 kb on + strand, within AO356_05860at 1297.448 kb on - strand, within AO356_05860at 1297.448 kb on - strand, within AO356_05860at 1297.448 kb on - strand, within AO356_05860at 1297.454 kb on - strand, within AO356_05860at 1297.454 kb on - strand, within AO356_05860at 1297.540 kb on + strand, within AO356_05860at 1297.540 kb on + strand, within AO356_05860at 1297.541 kb on - strand, within AO356_05860at 1297.541 kb on - strand, within AO356_05860at 1297.565 kb on + strand, within AO356_05860at 1297.566 kb on - strand, within AO356_05860at 1297.566 kb on - strand, within AO356_05860at 1297.566 kb on - strand, within AO356_05860at 1297.638 kb on - strand, within AO356_05860at 1297.792 kb on - strand, within AO356_05860at 1297.792 kb on - strand, within AO356_05860at 1297.792 kb on - strand, within AO356_05860at 1297.792 kb on - strand, within AO356_05860at 1297.872 kb on + strand, within AO356_05860at 1297.872 kb on + strand, within AO356_05860at 1297.872 kb on + strand, within AO356_05860at 1297.872 kb on + strand, within AO356_05860at 1297.872 kb on + strand, within AO356_05860at 1297.873 kb on - strand, within AO356_05860at 1297.873 kb on - strand, within AO356_05860at 1297.873 kb on - strand, within AO356_05860at 1297.873 kb on - strand, within AO356_05860

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,295,558 + AO356_05840 0.39 +1.3
1,295,559 - AO356_05840 0.39 +2.9
1,295,645 + AO356_05840 0.65 -1.5
1,295,645 + AO356_05840 0.65 -0.6
1,295,645 + AO356_05840 0.65 -0.4
1,295,645 + AO356_05840 0.65 -1.6
1,295,645 + AO356_05840 0.65 +0.7
1,295,645 + AO356_05840 0.65 -0.8
1,295,645 + AO356_05840 0.65 +0.0
1,295,646 - AO356_05840 0.65 -1.2
1,295,646 - AO356_05840 0.65 +1.2
1,295,646 - AO356_05840 0.65 +0.1
1,295,646 - AO356_05840 0.65 +1.2
1,295,646 - AO356_05840 0.65 -0.5
1,295,773 + -0.1
1,295,773 + -0.6
1,295,774 - +0.1
1,296,127 - AO356_05845 0.58 +0.7
1,296,406 + -0.2
1,296,406 + +0.0
1,296,406 + +0.3
1,296,407 - +0.4
1,296,407 - -2.6
1,296,407 - -1.2
1,296,407 - -0.7
1,296,497 - AO356_05850 0.21 -0.4
1,296,533 - AO356_05850 0.28 +0.1
1,296,832 + AO356_05850 0.87 -0.3
1,296,832 + AO356_05850 0.87 -0.1
1,296,833 - AO356_05850 0.87 +0.1
1,296,833 - AO356_05850 0.87 -3.5
1,296,916 + +0.8
1,296,916 + -0.1
1,296,978 + AO356_05855 0.12 -1.1
1,297,009 + AO356_05855 0.21 +1.2
1,297,009 + AO356_05855 0.21 +1.6
1,297,093 + AO356_05855 0.45 +1.3
1,297,093 + AO356_05855 0.45 +1.4
1,297,093 + AO356_05855 0.45 +0.3
1,297,093 + AO356_05855 0.45 -1.6
1,297,094 - AO356_05855 0.45 +0.9
1,297,094 - AO356_05855 0.45 +0.4
1,297,305 + +1.8
1,297,306 - +0.2
1,297,319 + +1.4
1,297,407 + AO356_05860 0.11 +0.9
1,297,407 + AO356_05860 0.11 +1.1
1,297,426 + AO356_05860 0.14 -0.4
1,297,447 + AO356_05860 0.17 +0.3
1,297,447 + AO356_05860 0.17 +0.4
1,297,447 + AO356_05860 0.17 +0.8
1,297,447 + AO356_05860 0.17 +0.4
1,297,448 - AO356_05860 0.17 -1.4
1,297,448 - AO356_05860 0.17 +1.4
1,297,448 - AO356_05860 0.17 -0.3
1,297,454 - AO356_05860 0.18 +0.3
1,297,454 - AO356_05860 0.18 -1.8
1,297,540 + AO356_05860 0.31 -0.4
1,297,540 + AO356_05860 0.31 -0.6
1,297,541 - AO356_05860 0.32 +2.0
1,297,541 - AO356_05860 0.32 +1.3
1,297,565 + AO356_05860 0.35 -0.5
1,297,566 - AO356_05860 0.36 -0.3
1,297,566 - AO356_05860 0.36 -0.5
1,297,566 - AO356_05860 0.36 +0.7
1,297,638 - AO356_05860 0.47 +1.5
1,297,792 - AO356_05860 0.71 -0.7
1,297,792 - AO356_05860 0.71 -0.9
1,297,792 - AO356_05860 0.71 -0.6
1,297,792 - AO356_05860 0.71 -0.6
1,297,872 + AO356_05860 0.83 -0.5
1,297,872 + AO356_05860 0.83 -2.5
1,297,872 + AO356_05860 0.83 +0.7
1,297,872 + AO356_05860 0.83 +0.6
1,297,872 + AO356_05860 0.83 -2.8
1,297,873 - AO356_05860 0.83 +0.3
1,297,873 - AO356_05860 0.83 +1.9
1,297,873 - AO356_05860 0.83 -0.5
1,297,873 - AO356_05860 0.83 +0.5

Or see this region's nucleotide sequence