Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04315 and AO356_04320 are separated by 34 nucleotides AO356_04320 and AO356_04325 are separated by 104 nucleotides
AO356_04315: AO356_04315 - AAA family ATPase, at 983,052 to 983,897
_04315
AO356_04320: AO356_04320 - hypothetical protein, at 983,932 to 985,110
_04320
AO356_04325: AO356_04325 - allophanate hydrolase, at 985,215 to 986,135
_04325
Position (kb) 983
984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 982.943 kb on + strand at 982.944 kb on - strand at 982.944 kb on - strand at 982.981 kb on - strand at 982.982 kb on + strand at 982.982 kb on + strand at 982.983 kb on - strand at 982.983 kb on - strand at 982.983 kb on - strand at 982.996 kb on - strand at 982.996 kb on - strand at 982.996 kb on - strand at 982.996 kb on - strand at 982.996 kb on - strand at 982.999 kb on + strand at 982.999 kb on + strand at 982.999 kb on + strand at 982.999 kb on + strand at 982.999 kb on + strand at 983.000 kb on - strand at 983.000 kb on - strand at 983.000 kb on - strand at 983.076 kb on + strand at 983.076 kb on + strand at 983.076 kb on + strand at 983.077 kb on - strand at 983.077 kb on - strand at 983.259 kb on + strand, within AO356_04315 at 983.260 kb on - strand, within AO356_04315 at 983.266 kb on - strand, within AO356_04315 at 983.332 kb on - strand, within AO356_04315 at 983.332 kb on - strand, within AO356_04315 at 983.332 kb on - strand, within AO356_04315 at 983.332 kb on - strand, within AO356_04315 at 983.463 kb on + strand, within AO356_04315 at 983.463 kb on + strand, within AO356_04315 at 983.463 kb on + strand, within AO356_04315 at 983.464 kb on - strand, within AO356_04315 at 983.464 kb on - strand, within AO356_04315 at 983.464 kb on - strand, within AO356_04315 at 983.464 kb on - strand, within AO356_04315 at 983.464 kb on - strand, within AO356_04315 at 983.464 kb on - strand, within AO356_04315 at 983.464 kb on - strand, within AO356_04315 at 983.464 kb on - strand, within AO356_04315 at 983.469 kb on + strand, within AO356_04315 at 983.519 kb on + strand, within AO356_04315 at 983.519 kb on + strand, within AO356_04315 at 983.519 kb on + strand, within AO356_04315 at 983.519 kb on + strand, within AO356_04315 at 983.519 kb on + strand, within AO356_04315 at 983.519 kb on + strand, within AO356_04315 at 983.519 kb on + strand, within AO356_04315 at 983.520 kb on - strand, within AO356_04315 at 983.520 kb on - strand, within AO356_04315 at 983.520 kb on - strand, within AO356_04315 at 983.577 kb on + strand, within AO356_04315 at 983.577 kb on + strand, within AO356_04315 at 983.577 kb on + strand, within AO356_04315 at 983.577 kb on + strand, within AO356_04315 at 983.578 kb on - strand, within AO356_04315 at 983.578 kb on - strand, within AO356_04315 at 983.578 kb on - strand, within AO356_04315 at 983.578 kb on - strand, within AO356_04315 at 983.972 kb on + strand at 983.973 kb on - strand at 984.052 kb on + strand, within AO356_04320 at 984.052 kb on + strand, within AO356_04320 at 984.052 kb on + strand, within AO356_04320 at 984.052 kb on + strand, within AO356_04320 at 984.052 kb on + strand, within AO356_04320 at 984.053 kb on - strand, within AO356_04320 at 984.053 kb on - strand, within AO356_04320 at 984.053 kb on - strand, within AO356_04320 at 984.053 kb on - strand, within AO356_04320 at 984.053 kb on - strand, within AO356_04320 at 984.053 kb on - strand, within AO356_04320 at 984.053 kb on - strand, within AO356_04320 at 984.053 kb on - strand, within AO356_04320 at 984.053 kb on - strand, within AO356_04320 at 984.053 kb on - strand, within AO356_04320 at 984.055 kb on + strand, within AO356_04320 at 984.055 kb on + strand, within AO356_04320 at 984.055 kb on + strand, within AO356_04320 at 984.055 kb on + strand, within AO356_04320 at 984.056 kb on - strand, within AO356_04320 at 984.056 kb on - strand, within AO356_04320 at 984.056 kb on - strand, within AO356_04320 at 984.124 kb on + strand, within AO356_04320 at 984.125 kb on - strand, within AO356_04320 at 984.442 kb on + strand, within AO356_04320 at 984.443 kb on - strand, within AO356_04320 at 984.510 kb on + strand, within AO356_04320 at 984.510 kb on + strand, within AO356_04320 at 984.511 kb on - strand, within AO356_04320 at 984.730 kb on + strand, within AO356_04320 at 984.731 kb on - strand, within AO356_04320 at 984.731 kb on - strand, within AO356_04320 at 984.731 kb on - strand, within AO356_04320 at 984.731 kb on - strand, within AO356_04320 at 984.736 kb on + strand, within AO356_04320 at 984.736 kb on + strand, within AO356_04320 at 984.736 kb on + strand, within AO356_04320 at 984.736 kb on + strand, within AO356_04320 at 984.736 kb on + strand, within AO356_04320 at 984.736 kb on + strand, within AO356_04320 at 984.737 kb on - strand, within AO356_04320 at 984.737 kb on - strand, within AO356_04320 at 984.737 kb on - strand, within AO356_04320 at 984.737 kb on - strand, within AO356_04320 at 984.737 kb on - strand, within AO356_04320 at 984.737 kb on - strand, within AO356_04320 at 984.737 kb on - strand, within AO356_04320 at 984.737 kb on - strand, within AO356_04320 at 984.737 kb on - strand, within AO356_04320 at 984.754 kb on + strand, within AO356_04320 at 984.754 kb on + strand, within AO356_04320 at 984.754 kb on + strand, within AO356_04320 at 984.826 kb on + strand, within AO356_04320 at 984.826 kb on + strand, within AO356_04320 at 984.827 kb on - strand, within AO356_04320 at 984.827 kb on - strand, within AO356_04320 at 984.827 kb on - strand, within AO356_04320 at 984.827 kb on - strand, within AO356_04320 at 984.827 kb on - strand, within AO356_04320 at 984.838 kb on + strand, within AO356_04320 at 984.839 kb on - strand, within AO356_04320 at 984.877 kb on + strand, within AO356_04320 at 984.878 kb on - strand, within AO356_04320 at 984.932 kb on - strand, within AO356_04320 at 984.932 kb on - strand, within AO356_04320 at 984.961 kb on + strand, within AO356_04320 at 984.961 kb on + strand, within AO356_04320 at 984.961 kb on + strand, within AO356_04320 at 984.962 kb on - strand, within AO356_04320 at 984.962 kb on - strand, within AO356_04320 at 984.962 kb on - strand, within AO356_04320 at 984.989 kb on - strand, within AO356_04320 at 985.011 kb on + strand at 985.011 kb on + strand at 985.011 kb on + strand at 985.058 kb on - strand at 985.058 kb on - strand at 985.058 kb on - strand at 985.108 kb on + strand at 985.108 kb on + strand at 985.174 kb on + strand at 985.174 kb on + strand at 985.174 kb on + strand at 985.175 kb on - strand at 985.175 kb on - strand at 985.175 kb on - strand at 985.175 kb on - strand at 985.175 kb on - strand at 985.175 kb on - strand at 985.175 kb on - strand at 985.175 kb on - strand at 985.175 kb on - strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.178 kb on + strand at 985.179 kb on - strand at 985.179 kb on - strand at 985.179 kb on - strand at 985.179 kb on - strand at 985.179 kb on - strand at 985.179 kb on - strand at 985.179 kb on - strand at 985.439 kb on + strand, within AO356_04325 at 985.440 kb on - strand, within AO356_04325 at 985.440 kb on - strand, within AO356_04325 at 985.468 kb on + strand, within AO356_04325 at 985.670 kb on - strand, within AO356_04325 at 985.795 kb on + strand, within AO356_04325 at 985.887 kb on + strand, within AO356_04325 at 985.888 kb on - strand, within AO356_04325 at 985.949 kb on + strand, within AO356_04325
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 982,943 + +1.0 982,944 - +0.9 982,944 - -0.7 982,981 - -0.1 982,982 + -0.6 982,982 + +0.7 982,983 - +0.5 982,983 - -0.0 982,983 - +0.2 982,996 - -0.7 982,996 - +0.6 982,996 - +0.5 982,996 - +0.4 982,996 - -2.9 982,999 + +0.0 982,999 + +1.5 982,999 + +0.0 982,999 + -0.8 982,999 + -0.3 983,000 - +1.7 983,000 - +0.7 983,000 - +0.3 983,076 + +1.3 983,076 + +0.5 983,076 + +1.2 983,077 - +1.6 983,077 - -1.1 983,259 + AO356_04315 0.24 +1.3 983,260 - AO356_04315 0.25 +1.1 983,266 - AO356_04315 0.25 -0.7 983,332 - AO356_04315 0.33 +0.9 983,332 - AO356_04315 0.33 -2.3 983,332 - AO356_04315 0.33 -1.9 983,332 - AO356_04315 0.33 +0.6 983,463 + AO356_04315 0.49 +1.0 983,463 + AO356_04315 0.49 -2.4 983,463 + AO356_04315 0.49 +1.5 983,464 - AO356_04315 0.49 +0.5 983,464 - AO356_04315 0.49 +1.3 983,464 - AO356_04315 0.49 +0.9 983,464 - AO356_04315 0.49 +0.5 983,464 - AO356_04315 0.49 +2.1 983,464 - AO356_04315 0.49 +1.5 983,464 - AO356_04315 0.49 +0.6 983,464 - AO356_04315 0.49 +1.8 983,469 + AO356_04315 0.49 +0.2 983,519 + AO356_04315 0.55 -0.7 983,519 + AO356_04315 0.55 -2.2 983,519 + AO356_04315 0.55 -2.0 983,519 + AO356_04315 0.55 +1.8 983,519 + AO356_04315 0.55 +0.6 983,519 + AO356_04315 0.55 -0.6 983,519 + AO356_04315 0.55 +2.0 983,520 - AO356_04315 0.55 -1.9 983,520 - AO356_04315 0.55 -1.9 983,520 - AO356_04315 0.55 -1.6 983,577 + AO356_04315 0.62 -0.8 983,577 + AO356_04315 0.62 +0.9 983,577 + AO356_04315 0.62 -2.0 983,577 + AO356_04315 0.62 +2.6 983,578 - AO356_04315 0.62 -2.1 983,578 - AO356_04315 0.62 -2.4 983,578 - AO356_04315 0.62 -0.1 983,578 - AO356_04315 0.62 -0.7 983,972 + +2.9 983,973 - +0.1 984,052 + AO356_04320 0.10 +0.6 984,052 + AO356_04320 0.10 +1.2 984,052 + AO356_04320 0.10 +0.4 984,052 + AO356_04320 0.10 +1.4 984,052 + AO356_04320 0.10 +0.1 984,053 - AO356_04320 0.10 -1.4 984,053 - AO356_04320 0.10 -0.2 984,053 - AO356_04320 0.10 -1.8 984,053 - AO356_04320 0.10 -0.2 984,053 - AO356_04320 0.10 -1.3 984,053 - AO356_04320 0.10 -0.3 984,053 - AO356_04320 0.10 -1.2 984,053 - AO356_04320 0.10 +1.7 984,053 - AO356_04320 0.10 -0.1 984,053 - AO356_04320 0.10 -1.0 984,055 + AO356_04320 0.10 -0.7 984,055 + AO356_04320 0.10 -1.5 984,055 + AO356_04320 0.10 +1.2 984,055 + AO356_04320 0.10 -1.1 984,056 - AO356_04320 0.11 -0.1 984,056 - AO356_04320 0.11 -1.9 984,056 - AO356_04320 0.11 +1.1 984,124 + AO356_04320 0.16 +1.4 984,125 - AO356_04320 0.16 +1.5 984,442 + AO356_04320 0.43 +1.2 984,443 - AO356_04320 0.43 -0.3 984,510 + AO356_04320 0.49 -1.9 984,510 + AO356_04320 0.49 -0.7 984,511 - AO356_04320 0.49 -0.6 984,730 + AO356_04320 0.68 -0.8 984,731 - AO356_04320 0.68 -0.4 984,731 - AO356_04320 0.68 +1.5 984,731 - AO356_04320 0.68 +1.5 984,731 - AO356_04320 0.68 +0.7 984,736 + AO356_04320 0.68 -0.3 984,736 + AO356_04320 0.68 +0.0 984,736 + AO356_04320 0.68 -1.1 984,736 + AO356_04320 0.68 +3.2 984,736 + AO356_04320 0.68 -0.5 984,736 + AO356_04320 0.68 +0.0 984,737 - AO356_04320 0.68 +0.1 984,737 - AO356_04320 0.68 +0.8 984,737 - AO356_04320 0.68 -2.4 984,737 - AO356_04320 0.68 +1.8 984,737 - AO356_04320 0.68 -0.5 984,737 - AO356_04320 0.68 +0.6 984,737 - AO356_04320 0.68 +0.7 984,737 - AO356_04320 0.68 +2.9 984,737 - AO356_04320 0.68 +0.2 984,754 + AO356_04320 0.70 -2.4 984,754 + AO356_04320 0.70 +0.2 984,754 + AO356_04320 0.70 -1.5 984,826 + AO356_04320 0.76 +0.0 984,826 + AO356_04320 0.76 -0.2 984,827 - AO356_04320 0.76 -0.5 984,827 - AO356_04320 0.76 +0.1 984,827 - AO356_04320 0.76 -0.8 984,827 - AO356_04320 0.76 +0.1 984,827 - AO356_04320 0.76 -0.7 984,838 + AO356_04320 0.77 -1.9 984,839 - AO356_04320 0.77 +0.6 984,877 + AO356_04320 0.80 +0.7 984,878 - AO356_04320 0.80 +0.1 984,932 - AO356_04320 0.85 -0.3 984,932 - AO356_04320 0.85 +0.1 984,961 + AO356_04320 0.87 +2.0 984,961 + AO356_04320 0.87 +0.8 984,961 + AO356_04320 0.87 +0.1 984,962 - AO356_04320 0.87 -0.1 984,962 - AO356_04320 0.87 -1.7 984,962 - AO356_04320 0.87 +1.7 984,989 - AO356_04320 0.90 +0.5 985,011 + -0.4 985,011 + +2.6 985,011 + -0.1 985,058 - -1.5 985,058 - +1.2 985,058 - -1.6 985,108 + +0.5 985,108 + -0.1 985,174 + -1.1 985,174 + +0.9 985,174 + -1.9 985,175 - -0.9 985,175 - +0.6 985,175 - +1.4 985,175 - +0.3 985,175 - +0.1 985,175 - -0.5 985,175 - +0.1 985,175 - -2.6 985,175 - +0.2 985,178 + +0.5 985,178 + +0.3 985,178 + +0.6 985,178 + +0.2 985,179 - +0.5 985,179 - -0.9 985,179 - +0.4 985,179 - -2.4 985,179 - +0.9 985,179 - +1.0 985,179 - -0.5 985,439 + AO356_04325 0.24 -2.2 985,440 - AO356_04325 0.24 +0.2 985,440 - AO356_04325 0.24 +0.1 985,468 + AO356_04325 0.27 -0.7 985,670 - AO356_04325 0.49 -0.7 985,795 + AO356_04325 0.63 +0.5 985,887 + AO356_04325 0.73 -1.0 985,888 - AO356_04325 0.73 -0.0 985,949 + AO356_04325 0.80 -0.5
Or see this region's nucleotide sequence