Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04185 and AO356_04190 are separated by 936 nucleotides AO356_04190 and AO356_04195 are separated by 324 nucleotides
AO356_04185: AO356_04185 - transposase, at 938,197 to 938,898
_04185
AO356_04190: AO356_04190 - hypothetical protein, at 939,835 to 940,104
_04190
AO356_04195: AO356_04195 - adhesin, at 940,429 to 953,463
_04195
Position (kb) 939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 938.852 kb on - strand at 938.852 kb on - strand at 938.880 kb on + strand at 938.880 kb on + strand at 938.881 kb on - strand at 938.898 kb on + strand at 938.899 kb on - strand at 938.932 kb on - strand at 939.027 kb on + strand at 939.084 kb on - strand at 939.110 kb on - strand at 939.111 kb on + strand at 939.186 kb on - strand at 939.186 kb on - strand at 939.399 kb on - strand at 939.561 kb on + strand at 939.562 kb on - strand at 939.562 kb on - strand at 939.562 kb on - strand at 939.626 kb on + strand at 939.650 kb on - strand at 939.674 kb on + strand at 939.683 kb on - strand at 939.774 kb on - strand at 940.122 kb on - strand at 940.290 kb on + strand at 940.365 kb on - strand at 940.369 kb on + strand at 940.406 kb on + strand at 940.432 kb on + strand at 940.432 kb on + strand at 940.471 kb on + strand at 940.471 kb on + strand at 940.472 kb on - strand at 940.530 kb on + strand at 940.534 kb on + strand at 940.534 kb on + strand at 940.535 kb on - strand at 940.535 kb on - strand at 940.535 kb on - strand at 940.546 kb on + strand at 940.546 kb on + strand at 940.546 kb on + strand at 940.547 kb on - strand at 940.549 kb on + strand at 940.596 kb on + strand at 940.597 kb on - strand at 940.597 kb on - strand at 940.623 kb on + strand at 940.623 kb on + strand at 940.623 kb on + strand at 940.624 kb on - strand at 940.624 kb on - strand at 940.624 kb on - strand at 940.624 kb on - strand at 940.624 kb on - strand at 940.624 kb on - strand at 940.624 kb on - strand at 940.694 kb on + strand at 940.695 kb on - strand at 940.779 kb on + strand at 940.780 kb on - strand at 941.041 kb on + strand at 941.041 kb on + strand at 941.041 kb on + strand at 941.041 kb on + strand at 941.042 kb on - strand at 941.042 kb on - strand at 941.042 kb on - strand at 941.042 kb on - strand at 941.042 kb on - strand at 941.042 kb on - strand at 941.042 kb on - strand at 941.042 kb on - strand at 941.042 kb on - strand at 941.058 kb on + strand at 941.058 kb on + strand at 941.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 938,852 - +0.1 938,852 - +0.3 938,880 + -0.1 938,880 + +0.8 938,881 - -0.6 938,898 + +1.0 938,899 - +0.2 938,932 - +0.5 939,027 + +0.0 939,084 - -0.6 939,110 - +0.8 939,111 + +0.2 939,186 - +0.1 939,186 - -2.5 939,399 - -0.0 939,561 + -0.2 939,562 - -0.3 939,562 - -1.7 939,562 - -0.8 939,626 + +1.1 939,650 - +1.5 939,674 + -1.8 939,683 - -0.1 939,774 - +1.1 940,122 - -1.7 940,290 + +0.5 940,365 - -0.1 940,369 + -0.4 940,406 + -1.5 940,432 + -2.8 940,432 + -1.4 940,471 + +0.3 940,471 + +0.1 940,472 - -0.7 940,530 + +0.2 940,534 + +0.3 940,534 + -0.5 940,535 - -1.1 940,535 - +0.9 940,535 - +1.5 940,546 + -1.5 940,546 + +0.6 940,546 + +0.8 940,547 - +0.6 940,549 + -0.1 940,596 + +0.4 940,597 - +1.1 940,597 - +0.6 940,623 + +0.4 940,623 + -0.4 940,623 + +0.2 940,624 - -0.9 940,624 - -0.1 940,624 - +2.0 940,624 - +0.9 940,624 - -1.6 940,624 - +2.2 940,624 - -0.5 940,694 + +2.1 940,695 - +0.5 940,779 + +0.6 940,780 - +0.3 941,041 + +0.6 941,041 + +1.8 941,041 + -1.2 941,041 + -0.7 941,042 - -0.1 941,042 - -0.5 941,042 - -1.8 941,042 - -1.8 941,042 - +0.9 941,042 - +0.1 941,042 - +0.3 941,042 - -0.7 941,042 - -2.1 941,058 + -0.1 941,058 + -0.8 941,058 + +0.3
Or see this region's nucleotide sequence