Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02400

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02395 and AO356_02400 are separated by 160 nucleotidesAO356_02400 and AO356_02405 are separated by 96 nucleotides AO356_02395: AO356_02395 - chemotaxis protein, at 522,482 to 524,047 _02395 AO356_02400: AO356_02400 - alpha/beta hydrolase, at 524,208 to 524,900 _02400 AO356_02405: AO356_02405 - cytochrome C oxidase Cbb3, at 524,997 to 526,421 _02405 Position (kb) 524 525Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 523.659 kb on + strand, within AO356_02395at 523.659 kb on + strand, within AO356_02395at 523.660 kb on - strand, within AO356_02395at 524.019 kb on - strandat 524.206 kb on + strandat 524.207 kb on - strandat 524.467 kb on + strand, within AO356_02400at 524.467 kb on + strand, within AO356_02400at 524.467 kb on + strand, within AO356_02400at 524.467 kb on + strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.468 kb on - strand, within AO356_02400at 524.578 kb on + strand, within AO356_02400at 524.578 kb on + strand, within AO356_02400at 524.578 kb on + strand, within AO356_02400at 524.579 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.597 kb on - strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.677 kb on + strand, within AO356_02400at 524.678 kb on - strand, within AO356_02400at 524.678 kb on - strand, within AO356_02400at 524.924 kb on + strandat 524.924 kb on + strandat 524.925 kb on - strandat 524.925 kb on - strandat 524.925 kb on - strandat 524.926 kb on + strandat 524.927 kb on - strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.008 kb on + strandat 525.009 kb on - strandat 525.009 kb on - strandat 525.014 kb on + strandat 525.015 kb on - strandat 525.021 kb on + strandat 525.021 kb on + strandat 525.022 kb on - strandat 525.027 kb on + strandat 525.027 kb on + strandat 525.027 kb on + strandat 525.028 kb on - strandat 525.028 kb on - strandat 525.028 kb on - strandat 525.053 kb on + strandat 525.054 kb on - strandat 525.054 kb on - strandat 525.232 kb on - strand, within AO356_02405at 525.345 kb on + strand, within AO356_02405at 525.346 kb on - strand, within AO356_02405at 525.363 kb on + strand, within AO356_02405at 525.363 kb on + strand, within AO356_02405at 525.364 kb on - strand, within AO356_02405at 525.386 kb on - strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.468 kb on + strand, within AO356_02405at 525.469 kb on - strand, within AO356_02405at 525.469 kb on - strand, within AO356_02405at 525.469 kb on - strand, within AO356_02405at 525.564 kb on + strand, within AO356_02405at 525.564 kb on + strand, within AO356_02405at 525.565 kb on - strand, within AO356_02405at 525.573 kb on + strand, within AO356_02405at 525.573 kb on + strand, within AO356_02405at 525.574 kb on - strand, within AO356_02405at 525.574 kb on - strand, within AO356_02405at 525.663 kb on + strand, within AO356_02405at 525.663 kb on + strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.664 kb on - strand, within AO356_02405at 525.666 kb on + strand, within AO356_02405at 525.666 kb on + strand, within AO356_02405at 525.666 kb on + strand, within AO356_02405at 525.667 kb on - strand, within AO356_02405at 525.747 kb on + strand, within AO356_02405at 525.747 kb on + strand, within AO356_02405at 525.777 kb on + strand, within AO356_02405at 525.893 kb on + strand, within AO356_02405at 525.893 kb on + strand, within AO356_02405

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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523,659 + AO356_02395 0.75 +1.9
523,659 + AO356_02395 0.75 -3.1
523,660 - AO356_02395 0.75 -1.6
524,019 - -3.0
524,206 + -0.0
524,207 - +0.0
524,467 + AO356_02400 0.37 -1.1
524,467 + AO356_02400 0.37 +0.2
524,467 + AO356_02400 0.37 +0.1
524,467 + AO356_02400 0.37 +1.7
524,468 - AO356_02400 0.38 +0.2
524,468 - AO356_02400 0.38 +1.5
524,468 - AO356_02400 0.38 +0.8
524,468 - AO356_02400 0.38 -2.7
524,468 - AO356_02400 0.38 -0.2
524,468 - AO356_02400 0.38 +0.2
524,578 + AO356_02400 0.53 +2.2
524,578 + AO356_02400 0.53 -0.5
524,578 + AO356_02400 0.53 -1.9
524,579 - AO356_02400 0.54 -2.6
524,597 - AO356_02400 0.56 +0.4
524,597 - AO356_02400 0.56 -1.3
524,597 - AO356_02400 0.56 -2.4
524,597 - AO356_02400 0.56 -0.1
524,677 + AO356_02400 0.68 -0.5
524,677 + AO356_02400 0.68 +0.3
524,677 + AO356_02400 0.68 -1.1
524,677 + AO356_02400 0.68 -4.1
524,678 - AO356_02400 0.68 -0.3
524,678 - AO356_02400 0.68 -0.6
524,924 + -1.7
524,924 + -1.3
524,925 - +1.0
524,925 - -0.8
524,925 - -1.6
524,926 + +0.2
524,927 - -2.1
525,008 + -1.6
525,008 + +3.4
525,008 + -1.5
525,008 + -1.5
525,008 + -1.5
525,009 - -1.9
525,009 - -2.8
525,014 + -2.5
525,015 - -0.6
525,021 + -1.1
525,021 + +1.0
525,022 - -0.7
525,027 + -0.4
525,027 + -1.6
525,027 + +0.8
525,028 - -0.8
525,028 - -0.4
525,028 - -1.4
525,053 + -1.8
525,054 - -0.5
525,054 - -1.6
525,232 - AO356_02405 0.16 -0.5
525,345 + AO356_02405 0.24 +0.0
525,346 - AO356_02405 0.24 -0.6
525,363 + AO356_02405 0.26 -0.5
525,363 + AO356_02405 0.26 -2.0
525,364 - AO356_02405 0.26 -1.1
525,386 - AO356_02405 0.27 -0.1
525,468 + AO356_02405 0.33 -2.1
525,468 + AO356_02405 0.33 -1.8
525,468 + AO356_02405 0.33 -0.1
525,468 + AO356_02405 0.33 +0.3
525,468 + AO356_02405 0.33 -1.6
525,468 + AO356_02405 0.33 +1.2
525,469 - AO356_02405 0.33 -0.1
525,469 - AO356_02405 0.33 -0.8
525,469 - AO356_02405 0.33 +1.0
525,564 + AO356_02405 0.40 +0.1
525,564 + AO356_02405 0.40 +0.4
525,565 - AO356_02405 0.40 +0.0
525,573 + AO356_02405 0.40 -1.7
525,573 + AO356_02405 0.40 -2.0
525,574 - AO356_02405 0.40 +0.6
525,574 - AO356_02405 0.40 -0.3
525,663 + AO356_02405 0.47 -0.7
525,663 + AO356_02405 0.47 +0.4
525,664 - AO356_02405 0.47 +0.4
525,664 - AO356_02405 0.47 +0.1
525,664 - AO356_02405 0.47 -0.5
525,664 - AO356_02405 0.47 -0.8
525,664 - AO356_02405 0.47 -0.9
525,664 - AO356_02405 0.47 -1.3
525,664 - AO356_02405 0.47 +0.7
525,666 + AO356_02405 0.47 -2.4
525,666 + AO356_02405 0.47 -0.6
525,666 + AO356_02405 0.47 -1.6
525,667 - AO356_02405 0.47 +0.5
525,747 + AO356_02405 0.53 -0.5
525,747 + AO356_02405 0.53 -1.0
525,777 + AO356_02405 0.55 -3.4
525,893 + AO356_02405 0.63 -1.0
525,893 + AO356_02405 0.63 -2.0

Or see this region's nucleotide sequence