Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00635 and AO356_00640 are separated by 163 nucleotides AO356_00640 and AO356_00645 are separated by 144 nucleotides AO356_00645 and AO356_00650 are separated by 54 nucleotides
AO356_00635: AO356_00635 - phenylacetic acid degradation protein, at 136,446 to 136,886
_00635
AO356_00640: AO356_00640 - TetR family transcriptional regulator, at 137,050 to 137,670
_00640
AO356_00645: AO356_00645 - phenol degradation protein meta, at 137,815 to 138,807
_00645
AO356_00650: AO356_00650 - MFS transporter, at 138,862 to 140,043
_00650
Position (kb) 137
138
139 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.833 kb on - strand, within AO356_00635 at 136.833 kb on - strand, within AO356_00635 at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.865 kb on - strand at 136.931 kb on - strand at 137.019 kb on + strand at 137.020 kb on - strand at 137.020 kb on - strand at 137.020 kb on - strand at 137.153 kb on + strand, within AO356_00640 at 137.154 kb on - strand, within AO356_00640 at 137.154 kb on - strand, within AO356_00640 at 137.212 kb on + strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.254 kb on + strand, within AO356_00640 at 137.255 kb on - strand, within AO356_00640 at 137.255 kb on - strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.297 kb on - strand, within AO356_00640 at 137.297 kb on - strand, within AO356_00640 at 137.350 kb on + strand, within AO356_00640 at 137.350 kb on + strand, within AO356_00640 at 137.618 kb on - strand at 137.756 kb on - strand at 137.990 kb on - strand, within AO356_00645 at 138.097 kb on + strand, within AO356_00645 at 138.097 kb on + strand, within AO356_00645 at 138.098 kb on - strand, within AO356_00645 at 138.098 kb on - strand, within AO356_00645 at 138.100 kb on + strand, within AO356_00645 at 138.100 kb on + strand, within AO356_00645 at 138.100 kb on + strand, within AO356_00645 at 138.100 kb on + strand, within AO356_00645 at 138.101 kb on - strand, within AO356_00645 at 138.101 kb on - strand, within AO356_00645 at 138.101 kb on - strand at 138.213 kb on + strand, within AO356_00645 at 138.445 kb on + strand, within AO356_00645 at 138.446 kb on - strand, within AO356_00645 at 138.446 kb on - strand, within AO356_00645 at 138.446 kb on - strand, within AO356_00645 at 138.452 kb on - strand, within AO356_00645 at 138.452 kb on - strand, within AO356_00645 at 138.605 kb on - strand, within AO356_00645 at 138.605 kb on - strand, within AO356_00645 at 138.605 kb on - strand, within AO356_00645 at 138.605 kb on - strand, within AO356_00645 at 138.733 kb on + strand at 138.733 kb on + strand at 138.734 kb on - strand at 138.734 kb on - strand at 138.816 kb on + strand at 138.829 kb on + strand at 138.829 kb on + strand at 138.830 kb on - strand at 138.830 kb on - strand at 139.011 kb on + strand, within AO356_00650 at 139.222 kb on + strand, within AO356_00650 at 139.717 kb on + strand, within AO356_00650 at 139.717 kb on + strand, within AO356_00650 at 139.718 kb on - strand, within AO356_00650 at 139.764 kb on + strand, within AO356_00650 at 139.765 kb on - strand, within AO356_00650 at 139.765 kb on - strand, within AO356_00650 at 139.765 kb on - strand, within AO356_00650
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 136,833 - AO356_00635 0.88 -0.7 136,833 - AO356_00635 0.88 +2.6 136,864 + +0.4 136,864 + +0.1 136,864 + -0.7 136,864 + +0.3 136,864 + +1.7 136,865 - -1.4 136,931 - -1.0 137,019 + -0.5 137,020 - +0.0 137,020 - -1.1 137,020 - +1.1 137,153 + AO356_00640 0.17 -2.1 137,154 - AO356_00640 0.17 +0.2 137,154 - AO356_00640 0.17 +1.0 137,212 + AO356_00640 0.26 -0.2 137,213 - AO356_00640 0.26 -2.6 137,213 - AO356_00640 0.26 +0.1 137,213 - AO356_00640 0.26 -0.2 137,254 + AO356_00640 0.33 +0.4 137,255 - AO356_00640 0.33 -0.3 137,255 - AO356_00640 0.33 +1.4 137,296 + AO356_00640 0.40 +0.4 137,296 + AO356_00640 0.40 -2.0 137,296 + AO356_00640 0.40 -2.1 137,297 - AO356_00640 0.40 +0.5 137,297 - AO356_00640 0.40 -1.9 137,350 + AO356_00640 0.48 -0.1 137,350 + AO356_00640 0.48 +0.6 137,618 - -2.4 137,756 - -1.2 137,990 - AO356_00645 0.18 +0.2 138,097 + AO356_00645 0.28 -0.5 138,097 + AO356_00645 0.28 +0.8 138,098 - AO356_00645 0.28 -1.4 138,098 - AO356_00645 0.28 +1.4 138,100 + AO356_00645 0.29 +1.4 138,100 + AO356_00645 0.29 +0.6 138,100 + AO356_00645 0.29 -0.2 138,100 + AO356_00645 0.29 +1.9 138,101 - AO356_00645 0.29 -1.9 138,101 - AO356_00645 0.29 -0.8 138,101 - -0.9 138,213 + AO356_00645 0.40 -1.0 138,445 + AO356_00645 0.63 +0.3 138,446 - AO356_00645 0.64 +0.0 138,446 - AO356_00645 0.64 -2.5 138,446 - AO356_00645 0.64 +1.6 138,452 - AO356_00645 0.64 -0.3 138,452 - AO356_00645 0.64 +2.0 138,605 - AO356_00645 0.80 -1.4 138,605 - AO356_00645 0.80 -1.1 138,605 - AO356_00645 0.80 -0.6 138,605 - AO356_00645 0.80 +0.9 138,733 + -0.4 138,733 + -2.6 138,734 - -0.1 138,734 - -0.0 138,816 + -0.2 138,829 + +0.2 138,829 + -0.3 138,830 - -0.5 138,830 - -2.1 139,011 + AO356_00650 0.13 -2.0 139,222 + AO356_00650 0.30 +0.1 139,717 + AO356_00650 0.72 -0.9 139,717 + AO356_00650 0.72 +0.3 139,718 - AO356_00650 0.72 +2.0 139,764 + AO356_00650 0.76 -1.9 139,765 - AO356_00650 0.76 -0.8 139,765 - AO356_00650 0.76 +0.6 139,765 - AO356_00650 0.76 +0.8
Or see this region's nucleotide sequence