Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26725

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26720 and AO353_26725 are separated by 195 nucleotidesAO353_26725 and AO353_26730 are separated by 79 nucleotides AO353_26720: AO353_26720 - LysR family transcriptional regulator, at 5,848,203 to 5,849,120 _26720 AO353_26725: AO353_26725 - potassium transporter KefB, at 5,849,316 to 5,851,124 _26725 AO353_26730: AO353_26730 - DNA alkylation repair protein, at 5,851,204 to 5,852,307 _26730 Position (kb) 5849 5850 5851 5852Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5848.341 kb on + strand, within AO353_26720at 5848.430 kb on + strand, within AO353_26720at 5848.430 kb on + strand, within AO353_26720at 5848.431 kb on - strand, within AO353_26720at 5848.431 kb on - strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.537 kb on + strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.538 kb on - strand, within AO353_26720at 5848.549 kb on + strand, within AO353_26720at 5848.550 kb on - strand, within AO353_26720at 5848.615 kb on + strandat 5848.615 kb on + strand, within AO353_26720at 5848.615 kb on + strand, within AO353_26720at 5848.615 kb on + strand, within AO353_26720at 5848.615 kb on + strand, within AO353_26720at 5848.615 kb on + strand, within AO353_26720at 5848.616 kb on - strand, within AO353_26720at 5848.616 kb on - strand, within AO353_26720at 5848.616 kb on - strand, within AO353_26720at 5848.616 kb on - strand, within AO353_26720at 5848.771 kb on + strand, within AO353_26720at 5848.771 kb on + strand, within AO353_26720at 5848.772 kb on - strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.798 kb on + strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.799 kb on - strand, within AO353_26720at 5848.802 kb on - strand, within AO353_26720at 5848.834 kb on + strand, within AO353_26720at 5848.835 kb on - strand, within AO353_26720at 5849.155 kb on + strandat 5849.155 kb on + strandat 5849.156 kb on - strandat 5849.189 kb on - strandat 5849.206 kb on + strandat 5849.206 kb on + strandat 5849.422 kb on - strandat 5849.422 kb on - strandat 5849.492 kb on + strandat 5849.492 kb on + strandat 5849.493 kb on - strandat 5849.640 kb on + strandat 5849.640 kb on + strand, within AO353_26725at 5849.640 kb on + strand, within AO353_26725at 5849.640 kb on + strand, within AO353_26725at 5849.640 kb on + strand, within AO353_26725at 5849.640 kb on + strand, within AO353_26725at 5849.640 kb on + strand, within AO353_26725at 5849.640 kb on + strand, within AO353_26725at 5849.640 kb on + strand, within AO353_26725at 5849.641 kb on - strand, within AO353_26725at 5849.641 kb on - strand, within AO353_26725at 5849.641 kb on - strand, within AO353_26725at 5849.925 kb on + strand, within AO353_26725at 5849.926 kb on - strand, within AO353_26725at 5849.926 kb on - strand, within AO353_26725at 5849.926 kb on - strand, within AO353_26725at 5850.396 kb on + strand, within AO353_26725at 5850.396 kb on + strand, within AO353_26725at 5850.396 kb on + strand, within AO353_26725at 5850.396 kb on + strand, within AO353_26725at 5850.396 kb on + strand, within AO353_26725at 5850.396 kb on + strand, within AO353_26725at 5850.396 kb on + strand, within AO353_26725at 5850.397 kb on - strand, within AO353_26725at 5850.397 kb on - strand, within AO353_26725at 5850.542 kb on - strand, within AO353_26725at 5850.623 kb on + strand, within AO353_26725at 5850.624 kb on - strand, within AO353_26725at 5850.678 kb on + strand, within AO353_26725at 5850.678 kb on + strand, within AO353_26725at 5850.678 kb on + strand, within AO353_26725at 5850.678 kb on + strand, within AO353_26725at 5850.679 kb on - strand, within AO353_26725at 5850.679 kb on - strand, within AO353_26725at 5850.679 kb on - strand, within AO353_26725at 5850.679 kb on - strand, within AO353_26725at 5850.891 kb on + strand, within AO353_26725at 5850.891 kb on + strand, within AO353_26725at 5850.891 kb on + strand, within AO353_26725at 5850.891 kb on + strand, within AO353_26725at 5850.892 kb on - strand, within AO353_26725at 5850.894 kb on + strand, within AO353_26725at 5850.894 kb on + strand, within AO353_26725at 5850.894 kb on + strand, within AO353_26725at 5850.894 kb on + strand, within AO353_26725at 5850.894 kb on + strand, within AO353_26725at 5850.894 kb on + strand, within AO353_26725at 5850.894 kb on + strand, within AO353_26725at 5851.020 kb on + strandat 5851.209 kb on + strandat 5851.209 kb on + strandat 5851.210 kb on - strandat 5851.414 kb on + strand, within AO353_26730at 5851.415 kb on - strand, within AO353_26730at 5851.415 kb on - strand, within AO353_26730at 5851.415 kb on - strand, within AO353_26730at 5851.492 kb on + strand, within AO353_26730at 5851.493 kb on - strand, within AO353_26730at 5851.493 kb on - strand, within AO353_26730at 5851.504 kb on + strand, within AO353_26730at 5851.504 kb on + strand, within AO353_26730at 5851.504 kb on + strand, within AO353_26730at 5851.504 kb on + strand, within AO353_26730at 5851.505 kb on - strand, within AO353_26730at 5851.505 kb on - strand, within AO353_26730at 5851.505 kb on - strand, within AO353_26730at 5851.505 kb on - strand, within AO353_26730at 5851.505 kb on - strand, within AO353_26730at 5851.546 kb on + strand, within AO353_26730at 5851.547 kb on - strand, within AO353_26730at 5851.547 kb on - strand, within AO353_26730at 5851.547 kb on - strand, within AO353_26730at 5851.547 kb on - strand, within AO353_26730at 5851.547 kb on - strand, within AO353_26730at 5851.748 kb on + strand, within AO353_26730at 5851.748 kb on + strand, within AO353_26730at 5851.748 kb on + strand, within AO353_26730at 5851.749 kb on - strand, within AO353_26730at 5851.749 kb on - strand, within AO353_26730at 5851.749 kb on - strand, within AO353_26730at 5851.783 kb on + strand, within AO353_26730at 5851.783 kb on + strand, within AO353_26730at 5851.783 kb on + strand, within AO353_26730at 5851.783 kb on + strand, within AO353_26730at 5851.783 kb on + strand, within AO353_26730at 5851.783 kb on + strand, within AO353_26730at 5851.784 kb on - strand, within AO353_26730at 5851.784 kb on - strand, within AO353_26730at 5851.784 kb on - strand, within AO353_26730at 5851.784 kb on - strand, within AO353_26730at 5851.784 kb on - strand, within AO353_26730at 5851.784 kb on - strand, within AO353_26730at 5851.784 kb on - strand, within AO353_26730at 5852.033 kb on + strand, within AO353_26730at 5852.033 kb on + strand, within AO353_26730at 5852.034 kb on - strand, within AO353_26730at 5852.034 kb on - strand, within AO353_26730at 5852.034 kb on - strand, within AO353_26730at 5852.104 kb on + strand, within AO353_26730at 5852.104 kb on + strand, within AO353_26730

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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5,848,341 + AO353_26720 0.15 -0.8
5,848,430 + AO353_26720 0.25 +1.0
5,848,430 + AO353_26720 0.25 +0.3
5,848,431 - AO353_26720 0.25 +0.6
5,848,431 - AO353_26720 0.25 +0.5
5,848,537 + AO353_26720 0.36 -0.5
5,848,537 + AO353_26720 0.36 -0.6
5,848,537 + AO353_26720 0.36 +0.4
5,848,537 + AO353_26720 0.36 +1.5
5,848,537 + AO353_26720 0.36 -0.1
5,848,537 + AO353_26720 0.36 +3.0
5,848,537 + AO353_26720 0.36 +0.3
5,848,537 + AO353_26720 0.36 -0.2
5,848,537 + AO353_26720 0.36 +1.5
5,848,538 - AO353_26720 0.36 -0.5
5,848,538 - AO353_26720 0.36 -1.4
5,848,538 - AO353_26720 0.36 -0.1
5,848,538 - AO353_26720 0.36 -0.6
5,848,538 - AO353_26720 0.36 +2.2
5,848,538 - AO353_26720 0.36 -0.4
5,848,538 - AO353_26720 0.36 -1.6
5,848,538 - AO353_26720 0.36 +0.4
5,848,538 - AO353_26720 0.36 -1.7
5,848,538 - AO353_26720 0.36 +1.4
5,848,538 - AO353_26720 0.36 +1.9
5,848,538 - AO353_26720 0.36 +1.0
5,848,538 - AO353_26720 0.36 -1.1
5,848,549 + AO353_26720 0.38 -0.1
5,848,550 - AO353_26720 0.38 +1.3
5,848,615 + +0.8
5,848,615 + AO353_26720 0.45 -2.0
5,848,615 + AO353_26720 0.45 +0.6
5,848,615 + AO353_26720 0.45 -0.2
5,848,615 + AO353_26720 0.45 +0.9
5,848,615 + AO353_26720 0.45 -0.4
5,848,616 - AO353_26720 0.45 +0.1
5,848,616 - AO353_26720 0.45 +0.8
5,848,616 - AO353_26720 0.45 -0.3
5,848,616 - AO353_26720 0.45 -1.9
5,848,771 + AO353_26720 0.62 +0.4
5,848,771 + AO353_26720 0.62 +0.1
5,848,772 - AO353_26720 0.62 -0.5
5,848,798 + AO353_26720 0.65 -0.6
5,848,798 + AO353_26720 0.65 +1.0
5,848,798 + AO353_26720 0.65 +0.7
5,848,798 + AO353_26720 0.65 -0.7
5,848,798 + AO353_26720 0.65 -2.4
5,848,798 + AO353_26720 0.65 +1.6
5,848,798 + AO353_26720 0.65 -0.3
5,848,798 + AO353_26720 0.65 -0.5
5,848,798 + AO353_26720 0.65 -0.3
5,848,799 - AO353_26720 0.65 +0.6
5,848,799 - AO353_26720 0.65 +1.3
5,848,799 - AO353_26720 0.65 -2.1
5,848,799 - AO353_26720 0.65 +1.6
5,848,799 - AO353_26720 0.65 +1.2
5,848,799 - AO353_26720 0.65 +1.0
5,848,799 - AO353_26720 0.65 +0.3
5,848,799 - AO353_26720 0.65 -1.2
5,848,802 - AO353_26720 0.65 +1.8
5,848,834 + AO353_26720 0.69 +1.9
5,848,835 - AO353_26720 0.69 -0.4
5,849,155 + -2.1
5,849,155 + +1.9
5,849,156 - +1.0
5,849,189 - +1.8
5,849,206 + -0.3
5,849,206 + -2.4
5,849,422 - +0.6
5,849,422 - -0.0
5,849,492 + +0.1
5,849,492 + +0.4
5,849,493 - -0.2
5,849,640 + -1.0
5,849,640 + AO353_26725 0.18 +0.6
5,849,640 + AO353_26725 0.18 -1.0
5,849,640 + AO353_26725 0.18 +1.0
5,849,640 + AO353_26725 0.18 -2.0
5,849,640 + AO353_26725 0.18 -2.0
5,849,640 + AO353_26725 0.18 -0.3
5,849,640 + AO353_26725 0.18 -2.4
5,849,640 + AO353_26725 0.18 -0.7
5,849,641 - AO353_26725 0.18 -1.9
5,849,641 - AO353_26725 0.18 +0.2
5,849,641 - AO353_26725 0.18 +0.4
5,849,925 + AO353_26725 0.34 -0.7
5,849,926 - AO353_26725 0.34 -2.7
5,849,926 - AO353_26725 0.34 -0.2
5,849,926 - AO353_26725 0.34 -0.6
5,850,396 + AO353_26725 0.60 -1.0
5,850,396 + AO353_26725 0.60 -1.6
5,850,396 + AO353_26725 0.60 -1.4
5,850,396 + AO353_26725 0.60 -0.2
5,850,396 + AO353_26725 0.60 -1.3
5,850,396 + AO353_26725 0.60 -1.7
5,850,396 + AO353_26725 0.60 -1.0
5,850,397 - AO353_26725 0.60 +0.8
5,850,397 - AO353_26725 0.60 -1.7
5,850,542 - AO353_26725 0.68 +1.0
5,850,623 + AO353_26725 0.72 +0.3
5,850,624 - AO353_26725 0.72 +1.2
5,850,678 + AO353_26725 0.75 +1.3
5,850,678 + AO353_26725 0.75 -1.4
5,850,678 + AO353_26725 0.75 -1.7
5,850,678 + AO353_26725 0.75 +0.5
5,850,679 - AO353_26725 0.75 -0.4
5,850,679 - AO353_26725 0.75 +1.1
5,850,679 - AO353_26725 0.75 -1.9
5,850,679 - AO353_26725 0.75 +0.4
5,850,891 + AO353_26725 0.87 +2.8
5,850,891 + AO353_26725 0.87 -0.7
5,850,891 + AO353_26725 0.87 +1.2
5,850,891 + AO353_26725 0.87 +0.3
5,850,892 - AO353_26725 0.87 -0.6
5,850,894 + AO353_26725 0.87 -1.5
5,850,894 + AO353_26725 0.87 +1.2
5,850,894 + AO353_26725 0.87 -0.7
5,850,894 + AO353_26725 0.87 +1.8
5,850,894 + AO353_26725 0.87 +1.0
5,850,894 + AO353_26725 0.87 +1.9
5,850,894 + AO353_26725 0.87 -3.0
5,851,020 + +0.4
5,851,209 + -1.0
5,851,209 + -1.6
5,851,210 - -2.7
5,851,414 + AO353_26730 0.19 +2.1
5,851,415 - AO353_26730 0.19 +1.2
5,851,415 - AO353_26730 0.19 -1.7
5,851,415 - AO353_26730 0.19 +0.3
5,851,492 + AO353_26730 0.26 +0.9
5,851,493 - AO353_26730 0.26 -0.3
5,851,493 - AO353_26730 0.26 -2.1
5,851,504 + AO353_26730 0.27 +0.6
5,851,504 + AO353_26730 0.27 -0.4
5,851,504 + AO353_26730 0.27 +1.5
5,851,504 + AO353_26730 0.27 -0.5
5,851,505 - AO353_26730 0.27 -2.3
5,851,505 - AO353_26730 0.27 +0.8
5,851,505 - AO353_26730 0.27 +1.8
5,851,505 - AO353_26730 0.27 -1.0
5,851,505 - AO353_26730 0.27 -0.7
5,851,546 + AO353_26730 0.31 -1.9
5,851,547 - AO353_26730 0.31 +0.9
5,851,547 - AO353_26730 0.31 +0.9
5,851,547 - AO353_26730 0.31 +1.4
5,851,547 - AO353_26730 0.31 +0.1
5,851,547 - AO353_26730 0.31 +3.2
5,851,748 + AO353_26730 0.49 -0.6
5,851,748 + AO353_26730 0.49 -0.6
5,851,748 + AO353_26730 0.49 -0.1
5,851,749 - AO353_26730 0.49 +0.7
5,851,749 - AO353_26730 0.49 -1.0
5,851,749 - AO353_26730 0.49 +0.6
5,851,783 + AO353_26730 0.52 -0.9
5,851,783 + AO353_26730 0.52 +0.9
5,851,783 + AO353_26730 0.52 -1.7
5,851,783 + AO353_26730 0.52 +1.1
5,851,783 + AO353_26730 0.52 -1.0
5,851,783 + AO353_26730 0.52 -0.5
5,851,784 - AO353_26730 0.53 +0.4
5,851,784 - AO353_26730 0.53 -1.2
5,851,784 - AO353_26730 0.53 -2.0
5,851,784 - AO353_26730 0.53 +0.1
5,851,784 - AO353_26730 0.53 +0.8
5,851,784 - AO353_26730 0.53 +0.6
5,851,784 - AO353_26730 0.53 +1.0
5,852,033 + AO353_26730 0.75 -0.0
5,852,033 + AO353_26730 0.75 -2.2
5,852,034 - AO353_26730 0.75 +1.5
5,852,034 - AO353_26730 0.75 -0.3
5,852,034 - AO353_26730 0.75 -2.0
5,852,104 + AO353_26730 0.82 -0.0
5,852,104 + AO353_26730 0.82 +0.9

Or see this region's nucleotide sequence