Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25140

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25135 and AO353_25140 are separated by 75 nucleotidesAO353_25140 and AO353_25145 are separated by 223 nucleotides AO353_25135: AO353_25135 - glycosyl hydrolase family 32, at 5,544,244 to 5,545,713 _25135 AO353_25140: AO353_25140 - transcriptional regulator, at 5,545,789 to 5,546,781 _25140 AO353_25145: AO353_25145 - butanediol dehydrogenase, at 5,547,005 to 5,548,099 _25145 Position (kb) 5545 5546 5547Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.792 kb on - strand, within AO353_25135at 5544.792 kb on - strand, within AO353_25135at 5544.809 kb on - strand, within AO353_25135at 5544.809 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.923 kb on + strand, within AO353_25135at 5544.923 kb on + strand, within AO353_25135at 5544.923 kb on + strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.932 kb on - strand, within AO353_25135at 5544.961 kb on + strand, within AO353_25135at 5544.979 kb on + strand, within AO353_25135at 5544.980 kb on - strand, within AO353_25135at 5545.069 kb on + strand, within AO353_25135at 5545.070 kb on - strand, within AO353_25135at 5545.070 kb on - strand, within AO353_25135at 5545.085 kb on + strand, within AO353_25135at 5545.250 kb on + strand, within AO353_25135at 5545.250 kb on + strand, within AO353_25135at 5545.251 kb on - strand, within AO353_25135at 5545.273 kb on - strand, within AO353_25135at 5545.316 kb on + strand, within AO353_25135at 5545.411 kb on + strand, within AO353_25135at 5545.411 kb on + strand, within AO353_25135at 5545.412 kb on - strand, within AO353_25135at 5545.429 kb on + strand, within AO353_25135at 5545.429 kb on + strand, within AO353_25135at 5545.430 kb on - strand, within AO353_25135at 5545.432 kb on + strand, within AO353_25135at 5545.432 kb on + strand, within AO353_25135at 5545.433 kb on - strand, within AO353_25135at 5545.445 kb on + strand, within AO353_25135at 5545.728 kb on - strandat 5545.728 kb on - strandat 5545.886 kb on - strandat 5545.886 kb on - strandat 5545.886 kb on - strandat 5546.007 kb on + strand, within AO353_25140at 5546.007 kb on + strand, within AO353_25140at 5546.007 kb on + strand, within AO353_25140at 5546.008 kb on - strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.072 kb on + strand, within AO353_25140at 5546.073 kb on - strand, within AO353_25140at 5546.073 kb on - strand, within AO353_25140at 5546.073 kb on - strand, within AO353_25140at 5546.073 kb on - strand, within AO353_25140at 5546.073 kb on - strand, within AO353_25140at 5546.077 kb on - strand, within AO353_25140at 5546.091 kb on - strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.257 kb on + strand, within AO353_25140at 5546.258 kb on - strandat 5546.258 kb on - strand, within AO353_25140at 5546.258 kb on - strand, within AO353_25140at 5546.258 kb on - strand, within AO353_25140at 5546.258 kb on - strand, within AO353_25140at 5546.258 kb on - strand, within AO353_25140at 5546.294 kb on + strand, within AO353_25140at 5546.294 kb on + strand, within AO353_25140at 5546.294 kb on + strand, within AO353_25140at 5546.294 kb on + strand, within AO353_25140at 5546.295 kb on - strand, within AO353_25140at 5546.295 kb on - strand, within AO353_25140at 5546.334 kb on + strand, within AO353_25140at 5546.434 kb on + strand, within AO353_25140at 5546.434 kb on + strand, within AO353_25140at 5546.435 kb on - strand, within AO353_25140at 5546.435 kb on - strand, within AO353_25140at 5546.435 kb on - strand, within AO353_25140at 5546.435 kb on - strand, within AO353_25140at 5546.500 kb on - strand, within AO353_25140at 5546.542 kb on - strand, within AO353_25140at 5546.542 kb on - strand, within AO353_25140at 5546.622 kb on + strand, within AO353_25140at 5546.622 kb on + strand, within AO353_25140at 5546.622 kb on + strand, within AO353_25140at 5546.622 kb on + strand, within AO353_25140at 5546.622 kb on + strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.623 kb on - strand, within AO353_25140at 5546.667 kb on - strand, within AO353_25140at 5546.667 kb on - strand, within AO353_25140at 5546.667 kb on - strand, within AO353_25140at 5546.677 kb on + strand, within AO353_25140at 5546.677 kb on + strand, within AO353_25140at 5546.680 kb on + strand, within AO353_25140at 5546.681 kb on - strand, within AO353_25140at 5546.681 kb on - strand, within AO353_25140at 5546.729 kb on + strandat 5546.729 kb on + strandat 5546.730 kb on - strandat 5546.777 kb on + strandat 5546.777 kb on + strandat 5546.779 kb on + strandat 5546.779 kb on + strandat 5546.780 kb on - strandat 5546.780 kb on - strandat 5546.920 kb on - strandat 5546.920 kb on - strandat 5546.933 kb on + strandat 5546.933 kb on + strandat 5546.933 kb on + strandat 5546.933 kb on + strandat 5546.934 kb on - strandat 5547.176 kb on - strand, within AO353_25145at 5547.177 kb on + strand, within AO353_25145at 5547.178 kb on - strand, within AO353_25145at 5547.212 kb on + strand, within AO353_25145at 5547.212 kb on + strand, within AO353_25145at 5547.213 kb on - strand, within AO353_25145at 5547.213 kb on - strand, within AO353_25145at 5547.372 kb on - strand, within AO353_25145at 5547.539 kb on + strand, within AO353_25145at 5547.540 kb on - strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.648 kb on + strand, within AO353_25145at 5547.649 kb on - strand, within AO353_25145at 5547.649 kb on - strand, within AO353_25145at 5547.649 kb on - strand, within AO353_25145at 5547.694 kb on + strand, within AO353_25145at 5547.694 kb on + strand, within AO353_25145at 5547.735 kb on + strand, within AO353_25145at 5547.735 kb on + strand, within AO353_25145at 5547.735 kb on + strand, within AO353_25145at 5547.736 kb on - strand, within AO353_25145at 5547.736 kb on - strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.753 kb on + strand, within AO353_25145at 5547.754 kb on - strand, within AO353_25145at 5547.754 kb on - strand, within AO353_25145at 5547.754 kb on - strand, within AO353_25145at 5547.756 kb on + strand, within AO353_25145at 5547.756 kb on + strand, within AO353_25145at 5547.756 kb on + strand, within AO353_25145at 5547.756 kb on + strand, within AO353_25145at 5547.756 kb on + strand, within AO353_25145at 5547.757 kb on - strand, within AO353_25145at 5547.757 kb on - strand, within AO353_25145at 5547.757 kb on - strand, within AO353_25145

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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5,544,791 + AO353_25135 0.37 -1.7
5,544,791 + AO353_25135 0.37 +1.6
5,544,791 + AO353_25135 0.37 -0.3
5,544,791 + AO353_25135 0.37 +0.0
5,544,791 + AO353_25135 0.37 +1.0
5,544,792 - AO353_25135 0.37 +0.2
5,544,792 - AO353_25135 0.37 +1.9
5,544,809 - AO353_25135 0.38 +0.3
5,544,809 - AO353_25135 0.38 +1.6
5,544,848 - AO353_25135 0.41 -1.7
5,544,848 - AO353_25135 0.41 +1.5
5,544,848 - AO353_25135 0.41 -0.3
5,544,848 - AO353_25135 0.41 -0.6
5,544,877 + AO353_25135 0.43 +1.2
5,544,877 + AO353_25135 0.43 -1.3
5,544,877 + AO353_25135 0.43 -1.3
5,544,877 + AO353_25135 0.43 +1.2
5,544,877 + AO353_25135 0.43 +0.1
5,544,878 - AO353_25135 0.43 +0.9
5,544,878 - AO353_25135 0.43 -0.1
5,544,878 - AO353_25135 0.43 -0.1
5,544,878 - AO353_25135 0.43 +0.3
5,544,878 - AO353_25135 0.43 -0.5
5,544,878 - AO353_25135 0.43 +0.1
5,544,879 + AO353_25135 0.43 +1.1
5,544,879 + AO353_25135 0.43 +0.9
5,544,879 + AO353_25135 0.43 -0.4
5,544,879 + AO353_25135 0.43 -1.8
5,544,879 + AO353_25135 0.43 +1.3
5,544,879 + AO353_25135 0.43 -1.1
5,544,879 + AO353_25135 0.43 -0.8
5,544,879 + AO353_25135 0.43 +2.8
5,544,879 + AO353_25135 0.43 -0.8
5,544,879 + AO353_25135 0.43 +0.0
5,544,880 - AO353_25135 0.43 -1.0
5,544,880 - AO353_25135 0.43 +1.0
5,544,880 - AO353_25135 0.43 +0.1
5,544,880 - AO353_25135 0.43 -1.7
5,544,880 - AO353_25135 0.43 -2.2
5,544,880 - AO353_25135 0.43 +1.1
5,544,880 - AO353_25135 0.43 +0.3
5,544,880 - AO353_25135 0.43 +2.5
5,544,880 - AO353_25135 0.43 +2.8
5,544,880 - AO353_25135 0.43 +0.1
5,544,880 - AO353_25135 0.43 -0.4
5,544,923 + AO353_25135 0.46 +2.8
5,544,923 + AO353_25135 0.46 -2.4
5,544,923 + AO353_25135 0.46 +0.1
5,544,924 - AO353_25135 0.46 -0.8
5,544,924 - AO353_25135 0.46 -1.3
5,544,924 - AO353_25135 0.46 +1.0
5,544,924 - AO353_25135 0.46 -0.5
5,544,932 - AO353_25135 0.47 +0.7
5,544,961 + AO353_25135 0.49 +1.5
5,544,979 + AO353_25135 0.50 -1.7
5,544,980 - AO353_25135 0.50 +0.9
5,545,069 + AO353_25135 0.56 +0.5
5,545,070 - AO353_25135 0.56 +2.8
5,545,070 - AO353_25135 0.56 +0.3
5,545,085 + AO353_25135 0.57 -2.3
5,545,250 + AO353_25135 0.68 -2.1
5,545,250 + AO353_25135 0.68 +0.4
5,545,251 - AO353_25135 0.69 +0.2
5,545,273 - AO353_25135 0.70 -1.8
5,545,316 + AO353_25135 0.73 +0.5
5,545,411 + AO353_25135 0.79 +0.7
5,545,411 + AO353_25135 0.79 +0.1
5,545,412 - AO353_25135 0.79 -3.0
5,545,429 + AO353_25135 0.81 +2.1
5,545,429 + AO353_25135 0.81 +1.8
5,545,430 - AO353_25135 0.81 -2.7
5,545,432 + AO353_25135 0.81 -2.3
5,545,432 + AO353_25135 0.81 +0.8
5,545,433 - AO353_25135 0.81 +1.5
5,545,445 + AO353_25135 0.82 -0.0
5,545,728 - -2.1
5,545,728 - -0.3
5,545,886 - -0.2
5,545,886 - +0.7
5,545,886 - +1.2
5,546,007 + AO353_25140 0.22 -1.3
5,546,007 + AO353_25140 0.22 -0.7
5,546,007 + AO353_25140 0.22 +2.4
5,546,008 - AO353_25140 0.22 +0.6
5,546,072 + AO353_25140 0.28 -1.2
5,546,072 + AO353_25140 0.28 -2.2
5,546,072 + AO353_25140 0.28 -0.2
5,546,072 + AO353_25140 0.28 -0.8
5,546,072 + AO353_25140 0.28 -0.1
5,546,072 + AO353_25140 0.28 +1.7
5,546,072 + AO353_25140 0.28 -0.2
5,546,073 - AO353_25140 0.29 -2.9
5,546,073 - AO353_25140 0.29 +0.1
5,546,073 - AO353_25140 0.29 +2.1
5,546,073 - AO353_25140 0.29 -0.5
5,546,073 - AO353_25140 0.29 -2.3
5,546,077 - AO353_25140 0.29 -2.3
5,546,091 - AO353_25140 0.30 +0.9
5,546,257 + AO353_25140 0.47 +0.0
5,546,257 + AO353_25140 0.47 +0.5
5,546,257 + AO353_25140 0.47 -0.1
5,546,257 + AO353_25140 0.47 -2.1
5,546,257 + AO353_25140 0.47 -2.2
5,546,257 + AO353_25140 0.47 +2.0
5,546,258 - +0.5
5,546,258 - AO353_25140 0.47 +1.3
5,546,258 - AO353_25140 0.47 -1.1
5,546,258 - AO353_25140 0.47 -1.2
5,546,258 - AO353_25140 0.47 -1.1
5,546,258 - AO353_25140 0.47 +1.5
5,546,294 + AO353_25140 0.51 +1.1
5,546,294 + AO353_25140 0.51 -1.0
5,546,294 + AO353_25140 0.51 -1.4
5,546,294 + AO353_25140 0.51 -1.9
5,546,295 - AO353_25140 0.51 -2.9
5,546,295 - AO353_25140 0.51 -1.0
5,546,334 + AO353_25140 0.55 +2.0
5,546,434 + AO353_25140 0.65 -1.5
5,546,434 + AO353_25140 0.65 -0.1
5,546,435 - AO353_25140 0.65 -0.5
5,546,435 - AO353_25140 0.65 -2.7
5,546,435 - AO353_25140 0.65 +0.9
5,546,435 - AO353_25140 0.65 -0.5
5,546,500 - AO353_25140 0.72 +0.2
5,546,542 - AO353_25140 0.76 -1.3
5,546,542 - AO353_25140 0.76 +1.9
5,546,622 + AO353_25140 0.84 -1.5
5,546,622 + AO353_25140 0.84 +0.4
5,546,622 + AO353_25140 0.84 -1.1
5,546,622 + AO353_25140 0.84 -3.1
5,546,622 + AO353_25140 0.84 -3.4
5,546,623 - AO353_25140 0.84 +0.0
5,546,623 - AO353_25140 0.84 -1.3
5,546,623 - AO353_25140 0.84 -2.8
5,546,623 - AO353_25140 0.84 +0.0
5,546,623 - AO353_25140 0.84 -2.8
5,546,623 - AO353_25140 0.84 +2.8
5,546,623 - AO353_25140 0.84 +0.8
5,546,623 - AO353_25140 0.84 -1.5
5,546,667 - AO353_25140 0.88 +0.9
5,546,667 - AO353_25140 0.88 -2.3
5,546,667 - AO353_25140 0.88 -1.7
5,546,677 + AO353_25140 0.89 -1.7
5,546,677 + AO353_25140 0.89 -0.1
5,546,680 + AO353_25140 0.90 +1.5
5,546,681 - AO353_25140 0.90 -1.1
5,546,681 - AO353_25140 0.90 +0.5
5,546,729 + -2.7
5,546,729 + -1.5
5,546,730 - +1.7
5,546,777 + +1.8
5,546,777 + +1.4
5,546,779 + +0.8
5,546,779 + +1.0
5,546,780 - -0.5
5,546,780 - +0.9
5,546,920 - -1.3
5,546,920 - -1.5
5,546,933 + -0.5
5,546,933 + -0.8
5,546,933 + +0.3
5,546,933 + +0.2
5,546,934 - +0.5
5,547,176 - AO353_25145 0.16 -1.8
5,547,177 + AO353_25145 0.16 -1.9
5,547,178 - AO353_25145 0.16 +2.1
5,547,212 + AO353_25145 0.19 +0.4
5,547,212 + AO353_25145 0.19 +0.1
5,547,213 - AO353_25145 0.19 -0.7
5,547,213 - AO353_25145 0.19 +0.5
5,547,372 - AO353_25145 0.34 +1.1
5,547,539 + AO353_25145 0.49 +1.0
5,547,540 - AO353_25145 0.49 -2.3
5,547,648 + AO353_25145 0.59 -1.3
5,547,648 + AO353_25145 0.59 +0.7
5,547,648 + AO353_25145 0.59 -1.3
5,547,648 + AO353_25145 0.59 -0.4
5,547,648 + AO353_25145 0.59 +0.5
5,547,648 + AO353_25145 0.59 +0.2
5,547,648 + AO353_25145 0.59 +2.2
5,547,648 + AO353_25145 0.59 +1.8
5,547,649 - AO353_25145 0.59 -0.3
5,547,649 - AO353_25145 0.59 +1.0
5,547,649 - AO353_25145 0.59 -1.1
5,547,694 + AO353_25145 0.63 +1.5
5,547,694 + AO353_25145 0.63 -0.0
5,547,735 + AO353_25145 0.67 +0.9
5,547,735 + AO353_25145 0.67 -1.7
5,547,735 + AO353_25145 0.67 +0.4
5,547,736 - AO353_25145 0.67 +0.5
5,547,736 - AO353_25145 0.67 +0.9
5,547,753 + AO353_25145 0.68 +1.4
5,547,753 + AO353_25145 0.68 +0.2
5,547,753 + AO353_25145 0.68 +1.1
5,547,753 + AO353_25145 0.68 -0.9
5,547,753 + AO353_25145 0.68 +1.3
5,547,753 + AO353_25145 0.68 +2.1
5,547,754 - AO353_25145 0.68 -2.1
5,547,754 - AO353_25145 0.68 +0.2
5,547,754 - AO353_25145 0.68 +0.4
5,547,756 + AO353_25145 0.69 -0.2
5,547,756 + AO353_25145 0.69 +0.4
5,547,756 + AO353_25145 0.69 -0.2
5,547,756 + AO353_25145 0.69 -3.3
5,547,756 + AO353_25145 0.69 -0.8
5,547,757 - AO353_25145 0.69 +0.3
5,547,757 - AO353_25145 0.69 +1.1
5,547,757 - AO353_25145 0.69 +1.0

Or see this region's nucleotide sequence