Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23780 and AO353_23785 are separated by 100 nucleotides AO353_23785 and AO353_23790 overlap by 1 nucleotides AO353_23790 and AO353_23795 are separated by 141 nucleotides
AO353_23780: AO353_23780 - hydroxyacid dehydrogenase, at 5,217,557 to 5,218,510
_23780
AO353_23785: AO353_23785 - hypothetical protein, at 5,218,611 to 5,219,045
_23785
AO353_23790: AO353_23790 - metal-binding protein, at 5,219,045 to 5,219,488
_23790
AO353_23795: AO353_23795 - chemotaxis protein, at 5,219,630 to 5,221,624
_23795
Position (kb) 5218
5219
5220 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5217.651 kb on + strand at 5217.652 kb on - strand at 5217.652 kb on - strand at 5217.674 kb on + strand, within AO353_23780 at 5217.674 kb on + strand, within AO353_23780 at 5217.675 kb on - strand, within AO353_23780 at 5217.675 kb on - strand, within AO353_23780 at 5217.675 kb on - strand, within AO353_23780 at 5217.675 kb on - strand, within AO353_23780 at 5217.675 kb on - strand, within AO353_23780 at 5217.946 kb on + strand, within AO353_23780 at 5217.947 kb on - strand, within AO353_23780 at 5218.080 kb on + strand, within AO353_23780 at 5218.200 kb on + strand, within AO353_23780 at 5218.200 kb on + strand, within AO353_23780 at 5218.200 kb on + strand, within AO353_23780 at 5218.201 kb on - strand, within AO353_23780 at 5218.201 kb on - strand, within AO353_23780 at 5218.201 kb on - strand, within AO353_23780 at 5218.404 kb on + strand, within AO353_23780 at 5218.404 kb on + strand, within AO353_23780 at 5218.405 kb on - strand, within AO353_23780 at 5218.405 kb on - strand, within AO353_23780 at 5218.413 kb on - strand, within AO353_23780 at 5218.545 kb on + strand at 5218.545 kb on + strand at 5218.546 kb on - strand at 5218.546 kb on - strand at 5218.546 kb on - strand at 5218.564 kb on + strand at 5218.564 kb on + strand at 5218.577 kb on - strand at 5218.587 kb on + strand at 5218.651 kb on + strand at 5218.780 kb on + strand, within AO353_23785 at 5218.789 kb on + strand, within AO353_23785 at 5218.790 kb on - strand, within AO353_23785 at 5219.023 kb on - strand at 5219.032 kb on + strand at 5219.032 kb on + strand at 5219.033 kb on - strand at 5219.109 kb on + strand, within AO353_23790 at 5219.109 kb on + strand, within AO353_23790 at 5219.109 kb on + strand at 5219.109 kb on + strand, within AO353_23790 at 5219.158 kb on + strand, within AO353_23790 at 5219.493 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.570 kb on - strand at 5219.580 kb on - strand at 5219.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 5,217,651 + +1.0 5,217,652 - -0.1 5,217,652 - -0.8 5,217,674 + AO353_23780 0.12 -0.4 5,217,674 + AO353_23780 0.12 +0.5 5,217,675 - AO353_23780 0.12 +1.1 5,217,675 - AO353_23780 0.12 -0.8 5,217,675 - AO353_23780 0.12 +0.6 5,217,675 - AO353_23780 0.12 +0.6 5,217,675 - AO353_23780 0.12 +1.6 5,217,946 + AO353_23780 0.41 +2.1 5,217,947 - AO353_23780 0.41 +0.9 5,218,080 + AO353_23780 0.55 -0.2 5,218,200 + AO353_23780 0.67 -1.6 5,218,200 + AO353_23780 0.67 +1.2 5,218,200 + AO353_23780 0.67 -1.8 5,218,201 - AO353_23780 0.68 -1.1 5,218,201 - AO353_23780 0.68 +0.6 5,218,201 - AO353_23780 0.68 -1.0 5,218,404 + AO353_23780 0.89 +3.6 5,218,404 + AO353_23780 0.89 +0.3 5,218,405 - AO353_23780 0.89 +0.1 5,218,405 - AO353_23780 0.89 -0.4 5,218,413 - AO353_23780 0.90 -0.1 5,218,545 + +0.9 5,218,545 + -0.3 5,218,546 - +2.4 5,218,546 - +0.2 5,218,546 - -2.4 5,218,564 + -1.2 5,218,564 + +0.9 5,218,577 - +0.3 5,218,587 + +0.8 5,218,651 + -1.8 5,218,780 + AO353_23785 0.39 +2.2 5,218,789 + AO353_23785 0.41 +0.1 5,218,790 - AO353_23785 0.41 +1.1 5,219,023 - -2.0 5,219,032 + +1.0 5,219,032 + -0.3 5,219,033 - -1.9 5,219,109 + AO353_23790 0.14 -1.0 5,219,109 + AO353_23790 0.14 -0.1 5,219,109 + -0.4 5,219,109 + AO353_23790 0.14 -1.8 5,219,158 + AO353_23790 0.25 +0.2 5,219,493 + +0.5 5,219,556 + -1.1 5,219,556 + -0.2 5,219,556 + +1.8 5,219,556 + -1.0 5,219,556 + +0.4 5,219,556 + +0.4 5,219,556 + +1.4 5,219,556 + -0.0 5,219,556 + -1.9 5,219,556 + -1.0 5,219,557 - +0.3 5,219,557 - +1.6 5,219,557 - -0.4 5,219,557 - +1.1 5,219,557 - -1.6 5,219,557 - +1.0 5,219,557 - -2.4 5,219,570 - -0.0 5,219,580 - +0.5 5,219,741 - +1.6
Or see this region's nucleotide sequence