Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12650

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12645 and AO353_12650 overlap by 17 nucleotidesAO353_12650 and AO353_12655 are separated by 200 nucleotidesAO353_12655 and AO353_12660 overlap by 8 nucleotides AO353_12645: AO353_12645 - hypothetical protein, at 2,783,298 to 2,785,637 _12645 AO353_12650: AO353_12650 - hypothetical protein, at 2,785,621 to 2,786,187 _12650 AO353_12655: AO353_12655 - thioesterase, at 2,786,388 to 2,786,813 _12655 AO353_12660: AO353_12660 - histidine ammonia-lyase, at 2,786,806 to 2,788,350 _12660 Position (kb) 2785 2786 2787Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2784.667 kb on + strand, within AO353_12645at 2784.667 kb on + strand, within AO353_12645at 2784.667 kb on + strand, within AO353_12645at 2784.668 kb on - strand, within AO353_12645at 2784.668 kb on - strand, within AO353_12645at 2784.668 kb on - strand, within AO353_12645at 2784.668 kb on - strand, within AO353_12645at 2784.668 kb on - strand, within AO353_12645at 2784.668 kb on - strand, within AO353_12645at 2784.734 kb on + strand, within AO353_12645at 2784.735 kb on - strand, within AO353_12645at 2784.735 kb on - strand, within AO353_12645at 2784.878 kb on + strand, within AO353_12645at 2784.879 kb on - strand, within AO353_12645at 2784.916 kb on + strand, within AO353_12645at 2784.916 kb on + strand, within AO353_12645at 2784.939 kb on + strand, within AO353_12645at 2784.939 kb on + strand, within AO353_12645at 2784.940 kb on - strand, within AO353_12645at 2784.940 kb on - strand, within AO353_12645at 2784.940 kb on - strand, within AO353_12645at 2785.215 kb on + strand, within AO353_12645at 2785.215 kb on + strand, within AO353_12645at 2785.215 kb on + strand, within AO353_12645at 2785.216 kb on - strand, within AO353_12645at 2785.216 kb on - strand, within AO353_12645at 2785.216 kb on - strand, within AO353_12645at 2785.216 kb on - strand, within AO353_12645at 2785.398 kb on - strand, within AO353_12645at 2785.398 kb on - strand, within AO353_12645at 2785.418 kb on + strandat 2785.419 kb on - strandat 2785.419 kb on - strandat 2785.419 kb on - strandat 2786.039 kb on - strand, within AO353_12650at 2786.197 kb on + strandat 2786.197 kb on + strandat 2786.197 kb on + strandat 2786.197 kb on + strandat 2786.314 kb on - strandat 2786.382 kb on + strandat 2786.382 kb on + strandat 2786.382 kb on + strandat 2786.383 kb on - strandat 2786.383 kb on - strandat 2786.417 kb on + strandat 2786.527 kb on + strand, within AO353_12655at 2786.528 kb on - strand, within AO353_12655at 2786.608 kb on + strand, within AO353_12655at 2786.608 kb on + strand, within AO353_12655at 2786.608 kb on + strand, within AO353_12655at 2786.608 kb on + strand, within AO353_12655at 2786.609 kb on - strand, within AO353_12655at 2786.609 kb on - strand, within AO353_12655at 2786.609 kb on - strand, within AO353_12655at 2786.665 kb on + strand, within AO353_12655at 2786.665 kb on + strand, within AO353_12655at 2786.665 kb on + strand, within AO353_12655at 2786.665 kb on + strand, within AO353_12655at 2786.665 kb on + strand, within AO353_12655at 2786.666 kb on - strand, within AO353_12655at 2786.666 kb on - strand, within AO353_12655at 2786.666 kb on - strand, within AO353_12655at 2786.666 kb on - strand, within AO353_12655at 2786.666 kb on - strand, within AO353_12655at 2786.666 kb on - strand, within AO353_12655at 2786.666 kb on - strandat 2786.713 kb on + strand, within AO353_12655at 2786.713 kb on + strand, within AO353_12655at 2786.713 kb on + strand, within AO353_12655at 2786.722 kb on + strand, within AO353_12655at 2786.722 kb on + strand, within AO353_12655at 2786.722 kb on + strand, within AO353_12655at 2786.722 kb on + strand, within AO353_12655at 2786.722 kb on + strand, within AO353_12655at 2786.722 kb on + strand, within AO353_12655at 2786.722 kb on + strand, within AO353_12655at 2786.723 kb on - strand, within AO353_12655at 2786.723 kb on - strand, within AO353_12655at 2786.723 kb on - strand, within AO353_12655at 2786.807 kb on + strandat 2786.808 kb on - strandat 2786.808 kb on - strandat 2787.181 kb on - strand, within AO353_12660at 2787.181 kb on - strand, within AO353_12660at 2787.181 kb on - strand, within AO353_12660

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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2,784,667 + AO353_12645 0.59 -0.5
2,784,667 + AO353_12645 0.59 -0.2
2,784,667 + AO353_12645 0.59 -1.8
2,784,668 - AO353_12645 0.59 +1.0
2,784,668 - AO353_12645 0.59 +3.4
2,784,668 - AO353_12645 0.59 +0.3
2,784,668 - AO353_12645 0.59 +0.6
2,784,668 - AO353_12645 0.59 +1.4
2,784,668 - AO353_12645 0.59 -2.1
2,784,734 + AO353_12645 0.61 +1.6
2,784,735 - AO353_12645 0.61 +1.1
2,784,735 - AO353_12645 0.61 -4.1
2,784,878 + AO353_12645 0.68 -0.6
2,784,879 - AO353_12645 0.68 -1.0
2,784,916 + AO353_12645 0.69 -2.9
2,784,916 + AO353_12645 0.69 -1.2
2,784,939 + AO353_12645 0.70 +0.9
2,784,939 + AO353_12645 0.70 -1.7
2,784,940 - AO353_12645 0.70 -2.5
2,784,940 - AO353_12645 0.70 -0.4
2,784,940 - AO353_12645 0.70 +0.0
2,785,215 + AO353_12645 0.82 +1.8
2,785,215 + AO353_12645 0.82 -2.7
2,785,215 + AO353_12645 0.82 -1.7
2,785,216 - AO353_12645 0.82 -0.3
2,785,216 - AO353_12645 0.82 -2.0
2,785,216 - AO353_12645 0.82 +1.7
2,785,216 - AO353_12645 0.82 +1.6
2,785,398 - AO353_12645 0.90 -2.0
2,785,398 - AO353_12645 0.90 -2.2
2,785,418 + -1.3
2,785,419 - -2.4
2,785,419 - +0.3
2,785,419 - +1.1
2,786,039 - AO353_12650 0.74 -2.1
2,786,197 + +1.4
2,786,197 + -0.7
2,786,197 + -0.8
2,786,197 + +1.4
2,786,314 - +0.7
2,786,382 + -0.8
2,786,382 + +0.2
2,786,382 + +0.4
2,786,383 - -1.2
2,786,383 - -0.2
2,786,417 + -2.2
2,786,527 + AO353_12655 0.33 -2.3
2,786,528 - AO353_12655 0.33 -0.8
2,786,608 + AO353_12655 0.52 -1.1
2,786,608 + AO353_12655 0.52 -0.8
2,786,608 + AO353_12655 0.52 -0.2
2,786,608 + AO353_12655 0.52 +1.1
2,786,609 - AO353_12655 0.52 +2.1
2,786,609 - AO353_12655 0.52 -1.3
2,786,609 - AO353_12655 0.52 +0.1
2,786,665 + AO353_12655 0.65 -0.4
2,786,665 + AO353_12655 0.65 -1.8
2,786,665 + AO353_12655 0.65 -0.6
2,786,665 + AO353_12655 0.65 +1.1
2,786,665 + AO353_12655 0.65 +1.8
2,786,666 - AO353_12655 0.65 -0.0
2,786,666 - AO353_12655 0.65 +1.1
2,786,666 - AO353_12655 0.65 +0.6
2,786,666 - AO353_12655 0.65 -1.0
2,786,666 - AO353_12655 0.65 +0.0
2,786,666 - AO353_12655 0.65 +0.4
2,786,666 - +2.4
2,786,713 + AO353_12655 0.76 +0.6
2,786,713 + AO353_12655 0.76 -1.4
2,786,713 + AO353_12655 0.76 +2.4
2,786,722 + AO353_12655 0.78 +1.2
2,786,722 + AO353_12655 0.78 +0.8
2,786,722 + AO353_12655 0.78 -1.7
2,786,722 + AO353_12655 0.78 +0.9
2,786,722 + AO353_12655 0.78 +2.2
2,786,722 + AO353_12655 0.78 +0.5
2,786,722 + AO353_12655 0.78 -2.3
2,786,723 - AO353_12655 0.79 -0.8
2,786,723 - AO353_12655 0.79 -2.1
2,786,723 - AO353_12655 0.79 -0.5
2,786,807 + +1.5
2,786,808 - +0.7
2,786,808 - -0.4
2,787,181 - AO353_12660 0.24 +0.2
2,787,181 - AO353_12660 0.24 -2.5
2,787,181 - AO353_12660 0.24 -0.0

Or see this region's nucleotide sequence