Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09330

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09325 and AO353_09330 are separated by 246 nucleotidesAO353_09330 and AO353_09335 are separated by 254 nucleotides AO353_09325: AO353_09325 - histidine kinase, at 2,044,398 to 2,045,798 _09325 AO353_09330: AO353_09330 - helicase, at 2,046,045 to 2,046,428 _09330 AO353_09335: AO353_09335 - transposase, at 2,046,683 to 2,048,113 _09335 Position (kb) 2046 2047Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2045.115 kb on + strand, within AO353_09325at 2045.115 kb on + strand, within AO353_09325at 2045.115 kb on + strand, within AO353_09325at 2045.116 kb on - strand, within AO353_09325at 2045.118 kb on + strand, within AO353_09325at 2045.118 kb on + strand, within AO353_09325at 2045.119 kb on - strand, within AO353_09325at 2045.119 kb on - strand, within AO353_09325at 2045.119 kb on - strand, within AO353_09325at 2045.280 kb on + strand, within AO353_09325at 2045.280 kb on + strand, within AO353_09325at 2045.280 kb on + strand, within AO353_09325at 2045.280 kb on + strand, within AO353_09325at 2045.281 kb on - strand, within AO353_09325at 2045.352 kb on + strand, within AO353_09325at 2045.352 kb on + strand, within AO353_09325at 2045.353 kb on - strand, within AO353_09325at 2045.353 kb on - strand, within AO353_09325at 2045.353 kb on - strand, within AO353_09325at 2045.353 kb on - strand, within AO353_09325at 2045.382 kb on + strand, within AO353_09325at 2045.383 kb on - strand, within AO353_09325at 2045.383 kb on - strand, within AO353_09325at 2045.548 kb on + strand, within AO353_09325at 2045.548 kb on + strand, within AO353_09325at 2045.549 kb on - strand, within AO353_09325at 2045.549 kb on - strand, within AO353_09325at 2045.583 kb on + strand, within AO353_09325at 2045.583 kb on + strand, within AO353_09325at 2045.583 kb on + strand, within AO353_09325at 2045.583 kb on + strand, within AO353_09325at 2045.584 kb on - strand, within AO353_09325at 2045.595 kb on + strand, within AO353_09325at 2045.847 kb on + strandat 2045.847 kb on + strandat 2045.847 kb on + strandat 2045.847 kb on + strandat 2045.847 kb on + strandat 2045.847 kb on + strandat 2045.847 kb on + strandat 2045.847 kb on + strandat 2045.847 kb on + strandat 2045.848 kb on - strandat 2045.848 kb on - strandat 2045.848 kb on - strandat 2045.848 kb on - strandat 2045.848 kb on - strandat 2045.848 kb on - strandat 2045.848 kb on - strandat 2045.878 kb on + strandat 2045.878 kb on + strandat 2045.878 kb on + strandat 2045.879 kb on - strandat 2045.879 kb on - strandat 2045.879 kb on - strandat 2045.879 kb on - strandat 2045.879 kb on - strandat 2045.954 kb on + strandat 2045.954 kb on + strandat 2045.954 kb on + strandat 2045.955 kb on - strandat 2045.955 kb on - strandat 2045.955 kb on - strandat 2045.955 kb on - strandat 2045.955 kb on - strandat 2046.036 kb on + strandat 2046.053 kb on + strandat 2046.053 kb on + strandat 2046.054 kb on - strandat 2046.079 kb on + strandat 2046.079 kb on + strandat 2046.079 kb on + strandat 2046.079 kb on + strandat 2046.079 kb on + strandat 2046.079 kb on + strandat 2046.080 kb on - strandat 2046.080 kb on - strandat 2046.080 kb on - strandat 2046.080 kb on - strandat 2046.080 kb on - strandat 2046.080 kb on - strandat 2046.080 kb on - strandat 2046.203 kb on - strand, within AO353_09330at 2046.244 kb on + strand, within AO353_09330at 2046.244 kb on + strand, within AO353_09330at 2046.244 kb on + strand, within AO353_09330at 2046.244 kb on + strand, within AO353_09330at 2046.244 kb on + strand, within AO353_09330at 2046.245 kb on - strand, within AO353_09330at 2046.245 kb on - strand, within AO353_09330at 2046.245 kb on - strand, within AO353_09330at 2046.245 kb on - strand, within AO353_09330at 2046.245 kb on - strand, within AO353_09330at 2046.245 kb on - strand, within AO353_09330at 2046.245 kb on - strand, within AO353_09330at 2046.245 kb on - strand, within AO353_09330at 2046.245 kb on - strand, within AO353_09330at 2046.245 kb on - strand, within AO353_09330at 2046.258 kb on - strand, within AO353_09330at 2046.339 kb on - strand, within AO353_09330at 2046.468 kb on - strandat 2046.505 kb on + strandat 2046.528 kb on - strandat 2046.580 kb on + strandat 2046.580 kb on + strandat 2046.580 kb on + strandat 2046.580 kb on + strandat 2046.580 kb on + strandat 2046.580 kb on + strandat 2046.580 kb on + strandat 2046.580 kb on + strandat 2046.581 kb on - strandat 2046.581 kb on - strandat 2046.581 kb on - strandat 2046.581 kb on - strandat 2046.581 kb on - strandat 2046.581 kb on - strandat 2046.581 kb on - strandat 2046.581 kb on - strandat 2046.624 kb on - strandat 2046.624 kb on - strandat 2046.624 kb on - strandat 2046.624 kb on - strandat 2046.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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2,045,115 + AO353_09325 0.51 +1.4
2,045,115 + AO353_09325 0.51 +0.6
2,045,115 + AO353_09325 0.51 +0.4
2,045,116 - AO353_09325 0.51 -1.0
2,045,118 + AO353_09325 0.51 -0.6
2,045,118 + AO353_09325 0.51 -0.7
2,045,119 - AO353_09325 0.51 -1.6
2,045,119 - AO353_09325 0.51 -1.4
2,045,119 - AO353_09325 0.51 -1.4
2,045,280 + AO353_09325 0.63 +0.3
2,045,280 + AO353_09325 0.63 +0.9
2,045,280 + AO353_09325 0.63 +1.6
2,045,280 + AO353_09325 0.63 +1.4
2,045,281 - AO353_09325 0.63 -0.1
2,045,352 + AO353_09325 0.68 +1.9
2,045,352 + AO353_09325 0.68 -0.6
2,045,353 - AO353_09325 0.68 -0.6
2,045,353 - AO353_09325 0.68 -0.0
2,045,353 - AO353_09325 0.68 +2.0
2,045,353 - AO353_09325 0.68 +0.6
2,045,382 + AO353_09325 0.70 -1.1
2,045,383 - AO353_09325 0.70 -0.7
2,045,383 - AO353_09325 0.70 -0.1
2,045,548 + AO353_09325 0.82 -2.4
2,045,548 + AO353_09325 0.82 +1.3
2,045,549 - AO353_09325 0.82 +0.4
2,045,549 - AO353_09325 0.82 +0.2
2,045,583 + AO353_09325 0.85 -2.0
2,045,583 + AO353_09325 0.85 -0.2
2,045,583 + AO353_09325 0.85 +0.7
2,045,583 + AO353_09325 0.85 -0.4
2,045,584 - AO353_09325 0.85 +0.2
2,045,595 + AO353_09325 0.85 -2.0
2,045,847 + +0.4
2,045,847 + -0.1
2,045,847 + +0.8
2,045,847 + -0.7
2,045,847 + -0.3
2,045,847 + +2.4
2,045,847 + -1.3
2,045,847 + +2.0
2,045,847 + -0.7
2,045,848 - +2.2
2,045,848 - -1.5
2,045,848 - -1.0
2,045,848 - -0.7
2,045,848 - -0.7
2,045,848 - -1.3
2,045,848 - -1.4
2,045,878 + -1.0
2,045,878 + -1.4
2,045,878 + +1.3
2,045,879 - -0.8
2,045,879 - +0.2
2,045,879 - -1.7
2,045,879 - -0.6
2,045,879 - +0.4
2,045,954 + -0.5
2,045,954 + +0.4
2,045,954 + -0.7
2,045,955 - -0.4
2,045,955 - +3.2
2,045,955 - +0.9
2,045,955 - -0.3
2,045,955 - -1.1
2,046,036 + +0.1
2,046,053 + -2.3
2,046,053 + +1.7
2,046,054 - -0.6
2,046,079 + +0.2
2,046,079 + -1.4
2,046,079 + -1.1
2,046,079 + -0.1
2,046,079 + +0.3
2,046,079 + +1.0
2,046,080 - +0.1
2,046,080 - -0.3
2,046,080 - +0.1
2,046,080 - -1.8
2,046,080 - -0.3
2,046,080 - +0.1
2,046,080 - +0.3
2,046,203 - AO353_09330 0.41 +1.8
2,046,244 + AO353_09330 0.52 -0.7
2,046,244 + AO353_09330 0.52 +1.2
2,046,244 + AO353_09330 0.52 -1.7
2,046,244 + AO353_09330 0.52 -1.7
2,046,244 + AO353_09330 0.52 -2.3
2,046,245 - AO353_09330 0.52 -2.8
2,046,245 - AO353_09330 0.52 -0.1
2,046,245 - AO353_09330 0.52 -0.1
2,046,245 - AO353_09330 0.52 +1.4
2,046,245 - AO353_09330 0.52 +1.4
2,046,245 - AO353_09330 0.52 -1.8
2,046,245 - AO353_09330 0.52 -0.1
2,046,245 - AO353_09330 0.52 -1.0
2,046,245 - AO353_09330 0.52 -3.1
2,046,245 - AO353_09330 0.52 +1.4
2,046,258 - AO353_09330 0.55 -0.2
2,046,339 - AO353_09330 0.77 -0.1
2,046,468 - -1.6
2,046,505 + +0.4
2,046,528 - +0.6
2,046,580 + +0.4
2,046,580 + +0.9
2,046,580 + +0.7
2,046,580 + -0.2
2,046,580 + +0.6
2,046,580 + -2.1
2,046,580 + +0.5
2,046,580 + -1.0
2,046,581 - +0.4
2,046,581 - +0.6
2,046,581 - +1.2
2,046,581 - -0.3
2,046,581 - -0.5
2,046,581 - -0.3
2,046,581 - +2.9
2,046,581 - +1.3
2,046,624 - +1.4
2,046,624 - -0.0
2,046,624 - +2.5
2,046,624 - -0.6
2,046,624 - -1.4

Or see this region's nucleotide sequence