Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08755

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08750 and AO353_08755 are separated by 100 nucleotidesAO353_08755 and AO353_08760 overlap by 4 nucleotides AO353_08750: AO353_08750 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 1,924,602 to 1,925,825 _08750 AO353_08755: AO353_08755 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 1,925,926 to 1,927,113 _08755 AO353_08760: AO353_08760 - Xaa-Pro aminopeptidase, at 1,927,110 to 1,928,444 _08760 Position (kb) 1925 1926 1927 1928Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1925.831 kb on - strandat 1925.831 kb on - strandat 1925.831 kb on - strandat 1925.831 kb on - strandat 1925.831 kb on - strandat 1925.831 kb on - strandat 1925.864 kb on - strandat 1925.864 kb on - strandat 1925.864 kb on - strandat 1925.864 kb on - strandat 1925.864 kb on - strandat 1925.899 kb on + strandat 1925.899 kb on + strandat 1925.899 kb on + strandat 1925.899 kb on + strandat 1925.899 kb on + strandat 1925.900 kb on - strandat 1925.900 kb on - strandat 1925.900 kb on - strandat 1925.903 kb on + strandat 1925.903 kb on + strandat 1927.207 kb on - strandat 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.282 kb on + strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.283 kb on - strand, within AO353_08760at 1927.286 kb on + strand, within AO353_08760at 1927.287 kb on - strand, within AO353_08760at 1927.348 kb on + strand, within AO353_08760at 1927.402 kb on + strand, within AO353_08760at 1927.402 kb on + strand, within AO353_08760at 1927.402 kb on + strand, within AO353_08760at 1927.402 kb on + strand, within AO353_08760at 1927.402 kb on + strand, within AO353_08760at 1927.402 kb on + strand, within AO353_08760at 1927.402 kb on + strand, within AO353_08760at 1927.403 kb on - strand, within AO353_08760at 1927.403 kb on - strand, within AO353_08760at 1927.403 kb on - strand, within AO353_08760at 1927.403 kb on - strand, within AO353_08760at 1927.403 kb on - strand, within AO353_08760at 1927.403 kb on - strand, within AO353_08760at 1927.403 kb on - strand, within AO353_08760at 1927.414 kb on + strand, within AO353_08760at 1927.414 kb on + strand, within AO353_08760at 1927.414 kb on + strand, within AO353_08760at 1927.414 kb on + strand, within AO353_08760at 1927.414 kb on + strand, within AO353_08760at 1927.414 kb on + strand, within AO353_08760at 1927.414 kb on + strand, within AO353_08760at 1927.414 kb on + strand, within AO353_08760at 1927.414 kb on + strand, within AO353_08760at 1927.415 kb on - strand, within AO353_08760at 1927.415 kb on - strand, within AO353_08760at 1927.415 kb on - strand, within AO353_08760at 1927.481 kb on + strand, within AO353_08760at 1927.482 kb on - strand, within AO353_08760at 1927.482 kb on - strand, within AO353_08760at 1927.485 kb on + strand, within AO353_08760at 1927.485 kb on + strand, within AO353_08760at 1927.485 kb on + strand, within AO353_08760at 1927.485 kb on + strand, within AO353_08760at 1927.485 kb on + strand, within AO353_08760at 1927.485 kb on + strand, within AO353_08760at 1927.486 kb on - strand, within AO353_08760at 1927.486 kb on - strand, within AO353_08760at 1927.486 kb on - strand, within AO353_08760at 1927.486 kb on - strand, within AO353_08760at 1927.486 kb on - strand, within AO353_08760at 1927.576 kb on + strand, within AO353_08760at 1927.576 kb on + strand, within AO353_08760at 1927.577 kb on - strand, within AO353_08760at 1927.577 kb on - strand, within AO353_08760at 1927.577 kb on - strand, within AO353_08760at 1927.600 kb on + strand, within AO353_08760at 1927.600 kb on + strand, within AO353_08760at 1927.600 kb on + strand, within AO353_08760at 1927.600 kb on + strand, within AO353_08760at 1927.601 kb on - strand, within AO353_08760at 1927.601 kb on - strand, within AO353_08760at 1927.601 kb on - strand, within AO353_08760at 1927.642 kb on + strand, within AO353_08760at 1927.643 kb on - strand, within AO353_08760at 1927.715 kb on - strand, within AO353_08760at 1927.715 kb on - strand, within AO353_08760at 1927.759 kb on + strand, within AO353_08760at 1927.920 kb on - strand, within AO353_08760at 1927.920 kb on - strand, within AO353_08760at 1928.062 kb on + strand, within AO353_08760at 1928.062 kb on + strand, within AO353_08760at 1928.062 kb on + strand, within AO353_08760at 1928.063 kb on - strand, within AO353_08760at 1928.063 kb on - strand, within AO353_08760

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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1,925,831 - +1.9
1,925,831 - +2.9
1,925,831 - -2.0
1,925,831 - +1.1
1,925,831 - +0.1
1,925,831 - +1.0
1,925,864 - +1.8
1,925,864 - +1.5
1,925,864 - -0.0
1,925,864 - -1.7
1,925,864 - -1.7
1,925,899 + -0.5
1,925,899 + +0.7
1,925,899 + -0.0
1,925,899 + +1.7
1,925,899 + +3.2
1,925,900 - -0.1
1,925,900 - +1.1
1,925,900 - +0.1
1,925,903 + +3.2
1,925,903 + -0.5
1,927,207 - -1.6
1,927,282 + AO353_08760 0.13 -0.5
1,927,282 + AO353_08760 0.13 +1.7
1,927,282 + AO353_08760 0.13 +1.5
1,927,282 + AO353_08760 0.13 +1.0
1,927,282 + AO353_08760 0.13 -0.5
1,927,282 + AO353_08760 0.13 +0.0
1,927,282 + AO353_08760 0.13 -0.4
1,927,282 + AO353_08760 0.13 +1.8
1,927,282 + AO353_08760 0.13 +1.5
1,927,282 + AO353_08760 0.13 -0.3
1,927,282 + AO353_08760 0.13 +2.4
1,927,282 + AO353_08760 0.13 +1.3
1,927,282 + AO353_08760 0.13 +1.3
1,927,282 + AO353_08760 0.13 -0.3
1,927,282 + AO353_08760 0.13 -0.4
1,927,282 + AO353_08760 0.13 +3.0
1,927,282 + AO353_08760 0.13 +1.5
1,927,282 + AO353_08760 0.13 +2.3
1,927,282 + AO353_08760 0.13 +0.7
1,927,282 + AO353_08760 0.13 +1.6
1,927,282 + AO353_08760 0.13 -1.3
1,927,283 - AO353_08760 0.13 +1.8
1,927,283 - AO353_08760 0.13 -0.1
1,927,283 - AO353_08760 0.13 +0.6
1,927,283 - AO353_08760 0.13 +1.2
1,927,283 - AO353_08760 0.13 +1.2
1,927,283 - AO353_08760 0.13 +0.3
1,927,283 - AO353_08760 0.13 +0.6
1,927,283 - AO353_08760 0.13 -1.2
1,927,283 - AO353_08760 0.13 +0.9
1,927,283 - AO353_08760 0.13 +0.4
1,927,283 - AO353_08760 0.13 +0.0
1,927,283 - AO353_08760 0.13 -2.4
1,927,283 - AO353_08760 0.13 +0.2
1,927,283 - AO353_08760 0.13 -1.4
1,927,283 - AO353_08760 0.13 +2.9
1,927,283 - AO353_08760 0.13 -1.3
1,927,283 - AO353_08760 0.13 +3.3
1,927,283 - AO353_08760 0.13 -1.2
1,927,283 - AO353_08760 0.13 -0.6
1,927,283 - AO353_08760 0.13 +0.8
1,927,283 - AO353_08760 0.13 +0.9
1,927,283 - AO353_08760 0.13 +2.0
1,927,283 - AO353_08760 0.13 +0.5
1,927,283 - AO353_08760 0.13 +0.2
1,927,283 - AO353_08760 0.13 +0.5
1,927,283 - AO353_08760 0.13 -0.2
1,927,286 + AO353_08760 0.13 +2.0
1,927,287 - AO353_08760 0.13 -1.6
1,927,348 + AO353_08760 0.18 -0.6
1,927,402 + AO353_08760 0.22 -1.6
1,927,402 + AO353_08760 0.22 -0.2
1,927,402 + AO353_08760 0.22 -0.8
1,927,402 + AO353_08760 0.22 -0.3
1,927,402 + AO353_08760 0.22 +2.6
1,927,402 + AO353_08760 0.22 +1.9
1,927,402 + AO353_08760 0.22 +2.4
1,927,403 - AO353_08760 0.22 +0.9
1,927,403 - AO353_08760 0.22 +0.5
1,927,403 - AO353_08760 0.22 -0.3
1,927,403 - AO353_08760 0.22 -0.5
1,927,403 - AO353_08760 0.22 -0.0
1,927,403 - AO353_08760 0.22 +0.4
1,927,403 - AO353_08760 0.22 +2.3
1,927,414 + AO353_08760 0.23 +1.7
1,927,414 + AO353_08760 0.23 +1.9
1,927,414 + AO353_08760 0.23 +2.2
1,927,414 + AO353_08760 0.23 -0.3
1,927,414 + AO353_08760 0.23 -1.2
1,927,414 + AO353_08760 0.23 +0.0
1,927,414 + AO353_08760 0.23 +3.1
1,927,414 + AO353_08760 0.23 +0.2
1,927,414 + AO353_08760 0.23 +1.5
1,927,415 - AO353_08760 0.23 -0.7
1,927,415 - AO353_08760 0.23 -1.2
1,927,415 - AO353_08760 0.23 +0.5
1,927,481 + AO353_08760 0.28 -0.7
1,927,482 - AO353_08760 0.28 +0.0
1,927,482 - AO353_08760 0.28 +0.7
1,927,485 + AO353_08760 0.28 +2.2
1,927,485 + AO353_08760 0.28 -0.0
1,927,485 + AO353_08760 0.28 +2.7
1,927,485 + AO353_08760 0.28 -0.1
1,927,485 + AO353_08760 0.28 +2.5
1,927,485 + AO353_08760 0.28 +0.3
1,927,486 - AO353_08760 0.28 +2.2
1,927,486 - AO353_08760 0.28 +0.8
1,927,486 - AO353_08760 0.28 +1.2
1,927,486 - AO353_08760 0.28 +0.4
1,927,486 - AO353_08760 0.28 +3.2
1,927,576 + AO353_08760 0.35 +3.9
1,927,576 + AO353_08760 0.35 +1.7
1,927,577 - AO353_08760 0.35 +2.0
1,927,577 - AO353_08760 0.35 -1.0
1,927,577 - AO353_08760 0.35 +1.4
1,927,600 + AO353_08760 0.37 +1.0
1,927,600 + AO353_08760 0.37 +0.5
1,927,600 + AO353_08760 0.37 +0.4
1,927,600 + AO353_08760 0.37 +2.8
1,927,601 - AO353_08760 0.37 +0.6
1,927,601 - AO353_08760 0.37 +0.5
1,927,601 - AO353_08760 0.37 +0.8
1,927,642 + AO353_08760 0.40 +1.2
1,927,643 - AO353_08760 0.40 -0.8
1,927,715 - AO353_08760 0.45 +2.1
1,927,715 - AO353_08760 0.45 -1.5
1,927,759 + AO353_08760 0.49 -1.4
1,927,920 - AO353_08760 0.61 +0.6
1,927,920 - AO353_08760 0.61 -0.5
1,928,062 + AO353_08760 0.71 +1.3
1,928,062 + AO353_08760 0.71 +0.9
1,928,062 + AO353_08760 0.71 +2.8
1,928,063 - AO353_08760 0.71 -0.1
1,928,063 - AO353_08760 0.71 +0.2

Or see this region's nucleotide sequence