Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02080 and AO353_02085 are separated by 404 nucleotides AO353_02085 and AO353_02090 are separated by 108 nucleotides
AO353_02080: AO353_02080 - DNA gyrase subunit A, at 443,355 to 446,024
_02080
AO353_02085: AO353_02085 - methylthioribose-1-phosphate isomerase, at 446,429 to 447,505
_02085
AO353_02090: AO353_02090 - N-ethylammeline chlorohydrolase, at 447,614 to 448,945
_02090
Position (kb) 446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 446.118 kb on - strand at 446.136 kb on - strand at 446.136 kb on - strand at 446.156 kb on - strand at 446.156 kb on - strand at 446.156 kb on - strand at 446.176 kb on - strand at 446.176 kb on - strand at 446.221 kb on - strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.244 kb on + strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.245 kb on - strand at 446.248 kb on + strand at 446.248 kb on + strand at 446.249 kb on - strand at 446.249 kb on - strand at 446.249 kb on - strand at 446.249 kb on - strand at 446.249 kb on - strand at 446.249 kb on - strand at 446.288 kb on + strand at 446.288 kb on + strand at 446.289 kb on - strand at 446.289 kb on - strand at 446.289 kb on - strand at 446.289 kb on - strand at 446.322 kb on + strand at 446.322 kb on + strand at 446.323 kb on - strand at 446.323 kb on - strand at 446.323 kb on - strand at 446.379 kb on + strand at 446.379 kb on + strand at 446.380 kb on - strand at 446.408 kb on + strand at 446.408 kb on + strand at 446.409 kb on - strand at 446.409 kb on - strand at 446.409 kb on - strand at 446.409 kb on - strand at 446.409 kb on - strand at 446.724 kb on + strand, within AO353_02085 at 446.724 kb on + strand, within AO353_02085 at 446.724 kb on + strand, within AO353_02085 at 446.725 kb on - strand, within AO353_02085 at 446.725 kb on - strand, within AO353_02085 at 446.725 kb on - strand, within AO353_02085 at 446.919 kb on + strand, within AO353_02085 at 446.919 kb on + strand, within AO353_02085 at 446.974 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.007 kb on + strand, within AO353_02085 at 447.008 kb on - strand, within AO353_02085 at 447.008 kb on - strand, within AO353_02085 at 447.365 kb on - strand, within AO353_02085 at 447.391 kb on + strand, within AO353_02085 at 447.392 kb on - strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.393 kb on + strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.394 kb on - strand, within AO353_02085 at 447.441 kb on + strand at 447.441 kb on + strand at 447.442 kb on - strand at 447.442 kb on - strand at 447.442 kb on - strand at 447.442 kb on - strand at 447.541 kb on + strand at 447.541 kb on + strand at 447.541 kb on + strand at 447.542 kb on - strand at 447.543 kb on + strand at 447.544 kb on - strand at 447.544 kb on - strand at 447.573 kb on + strand at 447.573 kb on + strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.574 kb on - strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.586 kb on + strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.587 kb on - strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.590 kb on + strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.591 kb on - strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.642 kb on + strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.643 kb on - strand at 447.663 kb on + strand at 447.664 kb on - strand at 447.666 kb on + strand at 447.666 kb on + strand at 447.666 kb on + strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.667 kb on - strand at 447.687 kb on + strand at 447.687 kb on + strand at 447.688 kb on - strand at 447.727 kb on + strand at 447.728 kb on - strand at 447.728 kb on - strand at 447.728 kb on - strand at 448.010 kb on + strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.011 kb on - strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.143 kb on + strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.203 kb on - strand, within AO353_02090 at 448.425 kb on + strand, within AO353_02090 at 448.432 kb on + strand, within AO353_02090 at 448.432 kb on + strand, within AO353_02090 at 448.433 kb on - strand, within AO353_02090 at 448.433 kb on - strand, within AO353_02090
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 446,118 - +2.6 446,136 - +0.5 446,136 - -0.1 446,156 - +1.3 446,156 - +1.9 446,156 - -1.5 446,176 - +1.0 446,176 - -1.5 446,221 - +0.6 446,244 + -1.4 446,244 + +2.6 446,244 + +1.0 446,244 + -0.4 446,244 + +2.7 446,244 + -0.9 446,244 + +5.6 446,244 + +1.9 446,245 - -0.1 446,245 - +0.6 446,245 - -2.1 446,245 - +0.8 446,245 - +0.2 446,245 - +0.9 446,245 - -1.1 446,248 + -1.1 446,248 + +0.4 446,249 - +0.9 446,249 - -1.4 446,249 - -2.0 446,249 - -2.1 446,249 - -0.9 446,249 - -1.3 446,288 + -0.2 446,288 + +0.5 446,289 - -2.6 446,289 - -1.1 446,289 - +0.4 446,289 - -0.1 446,322 + -0.6 446,322 + -1.4 446,323 - -0.4 446,323 - +0.4 446,323 - +0.2 446,379 + +1.5 446,379 + +1.6 446,380 - -1.8 446,408 + +0.9 446,408 + -0.4 446,409 - -1.5 446,409 - +0.4 446,409 - -2.7 446,409 - -2.1 446,409 - -1.0 446,724 + AO353_02085 0.27 +0.7 446,724 + AO353_02085 0.27 -2.0 446,724 + AO353_02085 0.27 -2.8 446,725 - AO353_02085 0.27 +0.3 446,725 - AO353_02085 0.27 -2.1 446,725 - AO353_02085 0.27 -3.1 446,919 + AO353_02085 0.45 +0.1 446,919 + AO353_02085 0.45 +0.0 446,974 + AO353_02085 0.51 -0.9 447,007 + AO353_02085 0.54 -2.6 447,007 + AO353_02085 0.54 -2.3 447,007 + AO353_02085 0.54 -2.0 447,007 + AO353_02085 0.54 -1.2 447,008 - AO353_02085 0.54 -0.4 447,008 - AO353_02085 0.54 -2.6 447,365 - AO353_02085 0.87 -1.0 447,391 + AO353_02085 0.89 +0.0 447,392 - AO353_02085 0.89 -1.8 447,393 + AO353_02085 0.90 -1.4 447,393 + AO353_02085 0.90 -0.3 447,393 + AO353_02085 0.90 -0.6 447,393 + AO353_02085 0.90 -1.1 447,393 + AO353_02085 0.90 -2.9 447,394 - AO353_02085 0.90 -0.2 447,394 - AO353_02085 0.90 -1.2 447,394 - AO353_02085 0.90 -3.1 447,394 - AO353_02085 0.90 -0.9 447,441 + -1.5 447,441 + -1.4 447,442 - -2.3 447,442 - +1.6 447,442 - +0.4 447,442 - +0.9 447,541 + -1.1 447,541 + -1.5 447,541 + -0.1 447,542 - -0.4 447,543 + -1.2 447,544 - +0.8 447,544 - +1.9 447,573 + -1.0 447,573 + -0.3 447,574 - +2.6 447,574 - +1.6 447,574 - -0.6 447,574 - +1.5 447,574 - +1.5 447,574 - +1.6 447,574 - +0.9 447,574 - +1.7 447,586 + +0.7 447,586 + +1.2 447,586 + +0.3 447,586 + -0.5 447,586 + -1.1 447,586 + -0.4 447,587 - +0.7 447,587 - +0.6 447,587 - +2.4 447,587 - +1.5 447,587 - +0.7 447,587 - +1.2 447,587 - -0.6 447,587 - -1.4 447,587 - +0.8 447,587 - -0.9 447,587 - +0.6 447,587 - -0.9 447,587 - +2.6 447,590 + +3.1 447,590 + -1.4 447,590 + +0.6 447,590 + +0.3 447,590 + -1.0 447,590 + +0.1 447,591 - +0.1 447,591 - -0.4 447,591 - +0.2 447,591 - +0.2 447,591 - -0.7 447,591 - -2.2 447,591 - -1.8 447,591 - +2.0 447,591 - -0.3 447,591 - +0.1 447,642 + -0.9 447,642 + -1.5 447,642 + -2.2 447,642 + +0.9 447,642 + -2.8 447,642 + +0.9 447,643 - +1.6 447,643 - +0.9 447,643 - -0.6 447,643 - -0.1 447,643 - -1.2 447,643 - +0.3 447,663 + +0.1 447,664 - -0.0 447,666 + -1.6 447,666 + -0.2 447,666 + +0.9 447,667 - -0.1 447,667 - -1.4 447,667 - +2.1 447,667 - +1.2 447,667 - -1.2 447,687 + +1.8 447,687 + +0.3 447,688 - +2.5 447,727 + +1.9 447,728 - +2.3 447,728 - +1.9 447,728 - -1.0 448,010 + AO353_02090 0.30 +1.5 448,011 - AO353_02090 0.30 +1.1 448,011 - AO353_02090 0.30 +0.7 448,011 - AO353_02090 0.30 +4.5 448,011 - AO353_02090 0.30 +1.3 448,011 - AO353_02090 0.30 +0.1 448,011 - AO353_02090 0.30 +1.1 448,011 - AO353_02090 0.30 +0.2 448,143 + AO353_02090 0.40 +0.0 448,143 + AO353_02090 0.40 -1.6 448,143 + AO353_02090 0.40 +1.0 448,143 + AO353_02090 0.40 +1.9 448,143 + AO353_02090 0.40 -0.0 448,203 - AO353_02090 0.44 +1.0 448,203 - AO353_02090 0.44 -0.6 448,203 - AO353_02090 0.44 -0.3 448,203 - AO353_02090 0.44 +0.8 448,203 - AO353_02090 0.44 +1.4 448,425 + AO353_02090 0.61 +1.6 448,432 + AO353_02090 0.61 +1.8 448,432 + AO353_02090 0.61 +1.9 448,433 - AO353_02090 0.61 +1.1 448,433 - AO353_02090 0.61 +0.6
Or see this region's nucleotide sequence