Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4168

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4166 and Ga0059261_4167 overlap by 4 nucleotidesGa0059261_4167 and Ga0059261_4168 are separated by 48 nucleotidesGa0059261_4168 and Ga0059261_4169 are separated by 220 nucleotides Ga0059261_4166: Ga0059261_4166 - hypothetical protein, at 4,317,593 to 4,318,009 _4166 Ga0059261_4167: Ga0059261_4167 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 4,318,006 to 4,318,572 _4167 Ga0059261_4168: Ga0059261_4168 - hypothetical protein, at 4,318,621 to 4,319,019 _4168 Ga0059261_4169: Ga0059261_4169 - Kef-type K+ transport system, predicted NAD-binding component, at 4,319,240 to 4,320,880 _4169 Position (kb) 4318 4319 4320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4317.734 kb on + strand, within Ga0059261_4166at 4317.734 kb on + strand, within Ga0059261_4166at 4317.734 kb on + strand, within Ga0059261_4166at 4317.734 kb on + strand, within Ga0059261_4166at 4317.734 kb on + strand, within Ga0059261_4166at 4317.735 kb on - strand, within Ga0059261_4166at 4317.735 kb on - strand, within Ga0059261_4166at 4317.735 kb on - strand, within Ga0059261_4166at 4317.735 kb on - strand, within Ga0059261_4166at 4317.735 kb on - strand, within Ga0059261_4166at 4317.737 kb on - strand, within Ga0059261_4166at 4317.737 kb on - strand, within Ga0059261_4166at 4317.737 kb on - strand, within Ga0059261_4166at 4317.758 kb on + strand, within Ga0059261_4166at 4317.758 kb on + strand, within Ga0059261_4166at 4317.758 kb on + strand, within Ga0059261_4166at 4317.758 kb on + strand, within Ga0059261_4166at 4317.758 kb on + strand, within Ga0059261_4166at 4317.759 kb on - strand, within Ga0059261_4166at 4317.865 kb on + strand, within Ga0059261_4166at 4317.954 kb on + strand, within Ga0059261_4166at 4317.954 kb on + strand, within Ga0059261_4166at 4317.955 kb on - strand, within Ga0059261_4166at 4318.113 kb on + strand, within Ga0059261_4167at 4318.114 kb on - strand, within Ga0059261_4167at 4318.307 kb on + strand, within Ga0059261_4167at 4318.307 kb on + strand, within Ga0059261_4167at 4318.307 kb on + strand, within Ga0059261_4167at 4318.307 kb on + strand, within Ga0059261_4167at 4318.307 kb on + strand, within Ga0059261_4167at 4318.308 kb on - strand, within Ga0059261_4167at 4318.308 kb on - strand, within Ga0059261_4167at 4318.308 kb on - strand, within Ga0059261_4167at 4318.308 kb on - strand, within Ga0059261_4167at 4318.308 kb on - strand, within Ga0059261_4167at 4318.308 kb on - strand, within Ga0059261_4167at 4318.347 kb on + strand, within Ga0059261_4167at 4318.372 kb on + strand, within Ga0059261_4167at 4318.372 kb on + strand, within Ga0059261_4167at 4318.374 kb on + strand, within Ga0059261_4167at 4318.374 kb on + strand, within Ga0059261_4167at 4318.374 kb on + strand, within Ga0059261_4167at 4318.374 kb on + strand, within Ga0059261_4167at 4318.374 kb on + strand, within Ga0059261_4167at 4318.374 kb on + strand, within Ga0059261_4167at 4318.375 kb on - strand, within Ga0059261_4167at 4318.375 kb on - strand, within Ga0059261_4167at 4318.453 kb on + strand, within Ga0059261_4167at 4318.609 kb on + strandat 4318.609 kb on + strandat 4318.609 kb on + strandat 4318.609 kb on + strandat 4318.609 kb on + strandat 4318.610 kb on - strandat 4318.610 kb on - strandat 4318.610 kb on - strandat 4318.922 kb on - strand, within Ga0059261_4168at 4319.065 kb on + strandat 4319.065 kb on + strandat 4319.065 kb on + strandat 4319.065 kb on + strandat 4319.065 kb on + strandat 4319.065 kb on + strandat 4319.066 kb on - strandat 4319.066 kb on - strandat 4319.066 kb on - strandat 4319.066 kb on - strandat 4319.066 kb on - strandat 4319.239 kb on + strandat 4319.239 kb on + strandat 4319.239 kb on + strandat 4319.239 kb on + strandat 4319.240 kb on - strandat 4319.240 kb on - strandat 4319.314 kb on + strandat 4319.314 kb on + strandat 4319.315 kb on - strandat 4319.315 kb on - strandat 4319.315 kb on - strandat 4319.315 kb on - strandat 4319.315 kb on - strandat 4319.315 kb on - strandat 4319.315 kb on - strandat 4319.326 kb on - strandat 4319.342 kb on + strandat 4319.343 kb on - strandat 4319.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,317,734 + Ga0059261_4166 0.34 +1.3
4,317,734 + Ga0059261_4166 0.34 +0.0
4,317,734 + Ga0059261_4166 0.34 +1.1
4,317,734 + Ga0059261_4166 0.34 +0.4
4,317,734 + Ga0059261_4166 0.34 +0.3
4,317,735 - Ga0059261_4166 0.34 -0.1
4,317,735 - Ga0059261_4166 0.34 +0.1
4,317,735 - Ga0059261_4166 0.34 -0.4
4,317,735 - Ga0059261_4166 0.34 -0.8
4,317,735 - Ga0059261_4166 0.34 -3.4
4,317,737 - Ga0059261_4166 0.35 +0.7
4,317,737 - Ga0059261_4166 0.35 +0.9
4,317,737 - Ga0059261_4166 0.35 +0.1
4,317,758 + Ga0059261_4166 0.40 +1.0
4,317,758 + Ga0059261_4166 0.40 +0.4
4,317,758 + Ga0059261_4166 0.40 +0.4
4,317,758 + Ga0059261_4166 0.40 +0.3
4,317,758 + Ga0059261_4166 0.40 +0.3
4,317,759 - Ga0059261_4166 0.40 +0.5
4,317,865 + Ga0059261_4166 0.65 -1.2
4,317,954 + Ga0059261_4166 0.87 +1.5
4,317,954 + Ga0059261_4166 0.87 -0.2
4,317,955 - Ga0059261_4166 0.87 +0.4
4,318,113 + Ga0059261_4167 0.19 +1.4
4,318,114 - Ga0059261_4167 0.19 +0.2
4,318,307 + Ga0059261_4167 0.53 -3.4
4,318,307 + Ga0059261_4167 0.53 -0.6
4,318,307 + Ga0059261_4167 0.53 +0.5
4,318,307 + Ga0059261_4167 0.53 +0.6
4,318,307 + Ga0059261_4167 0.53 +0.1
4,318,308 - Ga0059261_4167 0.53 +0.5
4,318,308 - Ga0059261_4167 0.53 +0.3
4,318,308 - Ga0059261_4167 0.53 +0.4
4,318,308 - Ga0059261_4167 0.53 +1.4
4,318,308 - Ga0059261_4167 0.53 -0.7
4,318,308 - Ga0059261_4167 0.53 -0.3
4,318,347 + Ga0059261_4167 0.60 +1.3
4,318,372 + Ga0059261_4167 0.65 -0.8
4,318,372 + Ga0059261_4167 0.65 +0.8
4,318,374 + Ga0059261_4167 0.65 -0.2
4,318,374 + Ga0059261_4167 0.65 +2.0
4,318,374 + Ga0059261_4167 0.65 -0.1
4,318,374 + Ga0059261_4167 0.65 +0.7
4,318,374 + Ga0059261_4167 0.65 +0.1
4,318,374 + Ga0059261_4167 0.65 -0.3
4,318,375 - Ga0059261_4167 0.65 +0.4
4,318,375 - Ga0059261_4167 0.65 +0.8
4,318,453 + Ga0059261_4167 0.79 +0.6
4,318,609 + +0.6
4,318,609 + +0.1
4,318,609 + -0.8
4,318,609 + +1.1
4,318,609 + -0.5
4,318,610 - +0.1
4,318,610 - -0.4
4,318,610 - +0.3
4,318,922 - Ga0059261_4168 0.75 +0.3
4,319,065 + -0.3
4,319,065 + -0.6
4,319,065 + +0.3
4,319,065 + -0.5
4,319,065 + -0.9
4,319,065 + +0.1
4,319,066 - +0.3
4,319,066 - +0.8
4,319,066 - +0.7
4,319,066 - -1.9
4,319,066 - +0.1
4,319,239 + -2.2
4,319,239 + -0.0
4,319,239 + +0.6
4,319,239 + +0.8
4,319,240 - -0.1
4,319,240 - +1.0
4,319,314 + -0.4
4,319,314 + +0.1
4,319,315 - +1.2
4,319,315 - -0.6
4,319,315 - -1.7
4,319,315 - +0.1
4,319,315 - -0.4
4,319,315 - +0.7
4,319,315 - -0.3
4,319,326 - +0.1
4,319,342 + +0.3
4,319,343 - +1.3
4,319,343 - -0.3

Or see this region's nucleotide sequence