Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3453

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3452 and Ga0059261_3453 are separated by 63 nucleotidesGa0059261_3453 and Ga0059261_3454 are separated by 350 nucleotidesGa0059261_3454 and Ga0059261_3455 overlap by 4 nucleotides Ga0059261_3452: Ga0059261_3452 - Cysteine synthase, at 3,576,416 to 3,577,408 _3452 Ga0059261_3453: Ga0059261_3453 - hypothetical protein, at 3,577,472 to 3,577,777 _3453 Ga0059261_3454: Ga0059261_3454 - Uncharacterized protein conserved in bacteria, at 3,578,128 to 3,578,637 _3454 Ga0059261_3455: Ga0059261_3455 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase, at 3,578,634 to 3,579,584 _3455 Position (kb) 3577 3578Strain fitness (log2 ratio) -3 -2 -1 0 1at 3576.506 kb on + strandat 3576.506 kb on + strandat 3576.507 kb on - strandat 3576.507 kb on - strandat 3576.507 kb on - strandat 3576.862 kb on + strandat 3577.055 kb on + strand, within Ga0059261_3452at 3577.055 kb on + strand, within Ga0059261_3452at 3577.055 kb on + strand, within Ga0059261_3452at 3577.055 kb on + strand, within Ga0059261_3452at 3577.058 kb on + strandat 3577.123 kb on + strandat 3577.346 kb on + strandat 3577.347 kb on - strandat 3577.347 kb on - strandat 3577.417 kb on + strandat 3577.417 kb on + strandat 3577.452 kb on + strandat 3577.452 kb on + strandat 3577.757 kb on + strandat 3577.758 kb on - strandat 3577.890 kb on + strandat 3577.890 kb on + strandat 3577.890 kb on + strandat 3577.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,576,506 + -2.4
3,576,506 + -1.7
3,576,507 - -3.2
3,576,507 - -2.9
3,576,507 - +0.5
3,576,862 + -1.7
3,577,055 + Ga0059261_3452 0.64 -2.6
3,577,055 + Ga0059261_3452 0.64 -2.1
3,577,055 + Ga0059261_3452 0.64 +1.3
3,577,055 + Ga0059261_3452 0.64 -2.7
3,577,058 + +0.8
3,577,123 + +0.3
3,577,346 + +0.5
3,577,347 - +1.2
3,577,347 - +1.1
3,577,417 + +0.5
3,577,417 + +1.3
3,577,452 + +0.3
3,577,452 + -0.3
3,577,757 + +0.3
3,577,758 - +0.8
3,577,890 + +0.1
3,577,890 + +0.1
3,577,890 + -0.5
3,577,922 - +1.3

Or see this region's nucleotide sequence