Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29690

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29685 and AO356_29690 are separated by 144 nucleotidesAO356_29690 and AO356_29695 overlap by 8 nucleotidesAO356_29695 and AO356_29700 overlap by 1 nucleotides AO356_29685: AO356_29685 - ABC transporter substrate-binding protein, at 6,905,276 to 6,906,100 _29685 AO356_29690: AO356_29690 - polysaccharide deacetylase, at 6,906,245 to 6,907,087 _29690 AO356_29695: AO356_29695 - polysaccharide deacetylase, at 6,907,080 to 6,907,964 _29695 AO356_29700: AO356_29700 - 2-methylcitrate dehydratase, at 6,907,964 to 6,909,313 _29700 Position (kb) 6906 6907 6908Strain fitness (log2 ratio) -2 -1 0 1 2at 6905.454 kb on - strand, within AO356_29685at 6905.642 kb on + strand, within AO356_29685at 6905.906 kb on + strand, within AO356_29685at 6905.906 kb on + strand, within AO356_29685at 6905.906 kb on + strand, within AO356_29685at 6905.907 kb on - strand, within AO356_29685at 6905.907 kb on - strand, within AO356_29685at 6905.907 kb on - strand, within AO356_29685at 6906.704 kb on + strand, within AO356_29690at 6906.737 kb on + strand, within AO356_29690at 6906.737 kb on + strand, within AO356_29690at 6906.737 kb on + strand, within AO356_29690at 6906.738 kb on - strand, within AO356_29690at 6906.822 kb on - strand, within AO356_29690at 6906.860 kb on - strand, within AO356_29690at 6906.903 kb on - strand, within AO356_29690at 6906.903 kb on - strand, within AO356_29690at 6906.964 kb on + strand, within AO356_29690at 6907.126 kb on + strandat 6907.141 kb on - strandat 6907.383 kb on + strand, within AO356_29695at 6907.618 kb on - strand, within AO356_29695at 6907.618 kb on - strand, within AO356_29695at 6907.758 kb on + strand, within AO356_29695at 6907.936 kb on - strandat 6907.936 kb on - strandat 6908.022 kb on + strandat 6908.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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6,905,454 - AO356_29685 0.22 -0.3
6,905,642 + AO356_29685 0.44 +2.1
6,905,906 + AO356_29685 0.76 -0.4
6,905,906 + AO356_29685 0.76 +1.4
6,905,906 + AO356_29685 0.76 -0.0
6,905,907 - AO356_29685 0.76 +1.9
6,905,907 - AO356_29685 0.76 +0.5
6,905,907 - AO356_29685 0.76 +0.1
6,906,704 + AO356_29690 0.54 +1.0
6,906,737 + AO356_29690 0.58 +1.9
6,906,737 + AO356_29690 0.58 -2.4
6,906,737 + AO356_29690 0.58 -1.0
6,906,738 - AO356_29690 0.58 +0.5
6,906,822 - AO356_29690 0.68 +0.3
6,906,860 - AO356_29690 0.73 +1.3
6,906,903 - AO356_29690 0.78 +0.5
6,906,903 - AO356_29690 0.78 -0.5
6,906,964 + AO356_29690 0.85 -0.4
6,907,126 + +0.7
6,907,141 - +1.5
6,907,383 + AO356_29695 0.34 -0.4
6,907,618 - AO356_29695 0.61 -0.0
6,907,618 - AO356_29695 0.61 +1.8
6,907,758 + AO356_29695 0.77 -1.3
6,907,936 - -1.6
6,907,936 - +0.2
6,908,022 + -0.9
6,908,023 - -0.5

Or see this region's nucleotide sequence