Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29075

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29070 and AO356_29075 are separated by 16 nucleotidesAO356_29075 and AO356_29080 are separated by 26 nucleotides AO356_29070: AO356_29070 - succinate-semialdehyde dehydrogenase, at 6,759,417 to 6,760,886 _29070 AO356_29075: AO356_29075 - dihydrodipicolinate synthetase, at 6,760,903 to 6,761,919 _29075 AO356_29080: AO356_29080 - ornithine cyclodeaminase, at 6,761,946 to 6,762,956 _29080 Position (kb) 6760 6761 6762Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6759.973 kb on + strand, within AO356_29070at 6759.974 kb on - strand, within AO356_29070at 6760.479 kb on + strand, within AO356_29070at 6760.799 kb on - strandat 6760.840 kb on + strandat 6760.841 kb on - strandat 6760.876 kb on - strandat 6760.876 kb on - strandat 6760.876 kb on - strandat 6761.066 kb on + strand, within AO356_29075at 6761.108 kb on + strand, within AO356_29075at 6761.337 kb on - strand, within AO356_29075at 6761.531 kb on + strand, within AO356_29075at 6761.531 kb on + strand, within AO356_29075at 6761.531 kb on + strand, within AO356_29075at 6761.947 kb on + strandat 6762.014 kb on - strandat 6762.209 kb on + strand, within AO356_29080at 6762.506 kb on + strand, within AO356_29080at 6762.506 kb on + strand, within AO356_29080at 6762.691 kb on + strand, within AO356_29080at 6762.740 kb on + strand, within AO356_29080

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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6,759,973 + AO356_29070 0.38 +2.2
6,759,974 - AO356_29070 0.38 +0.2
6,760,479 + AO356_29070 0.72 +1.1
6,760,799 - +2.8
6,760,840 + -1.6
6,760,841 - -1.9
6,760,876 - -0.3
6,760,876 - +0.6
6,760,876 - -0.3
6,761,066 + AO356_29075 0.16 +0.6
6,761,108 + AO356_29075 0.20 +1.3
6,761,337 - AO356_29075 0.43 +1.7
6,761,531 + AO356_29075 0.62 +1.6
6,761,531 + AO356_29075 0.62 +0.5
6,761,531 + AO356_29075 0.62 +1.3
6,761,947 + +1.5
6,762,014 - -2.6
6,762,209 + AO356_29080 0.26 -2.2
6,762,506 + AO356_29080 0.55 +1.6
6,762,506 + AO356_29080 0.55 -3.0
6,762,691 + AO356_29080 0.74 +1.5
6,762,740 + AO356_29080 0.79 +0.5

Or see this region's nucleotide sequence