Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24840 and AO356_24845 are separated by 586 nucleotides AO356_24845 and AO356_24850 overlap by 4 nucleotides AO356_24850 and AO356_24855 are separated by 225 nucleotides
AO356_24840: AO356_24840 - hypothetical protein, at 5,629,516 to 5,630,148
_24840
AO356_24845: AO356_24845 - ATPase, at 5,630,735 to 5,632,045
_24845
AO356_24850: AO356_24850 - chemotaxis protein CheY, at 5,632,042 to 5,632,782
_24850
AO356_24855: AO356_24855 - hypothetical protein, at 5,633,008 to 5,633,271
_24855
Position (kb) 5630
5631
5632
5633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5629.768 kb on + strand, within AO356_24840 at 5629.768 kb on + strand, within AO356_24840 at 5629.768 kb on + strand, within AO356_24840 at 5629.768 kb on + strand, within AO356_24840 at 5629.772 kb on + strand, within AO356_24840 at 5629.841 kb on + strand, within AO356_24840 at 5629.842 kb on - strand, within AO356_24840 at 5629.848 kb on - strand, within AO356_24840 at 5629.848 kb on - strand, within AO356_24840 at 5629.848 kb on - strand, within AO356_24840 at 5630.150 kb on + strand at 5630.150 kb on + strand at 5630.150 kb on + strand at 5630.150 kb on + strand at 5630.150 kb on + strand at 5630.262 kb on + strand at 5630.262 kb on + strand at 5630.263 kb on - strand at 5630.291 kb on + strand at 5630.291 kb on + strand at 5630.292 kb on - strand at 5630.292 kb on - strand at 5630.292 kb on - strand at 5630.292 kb on - strand at 5630.292 kb on - strand at 5630.314 kb on + strand at 5630.555 kb on - strand at 5631.126 kb on + strand, within AO356_24845 at 5631.798 kb on + strand, within AO356_24845 at 5631.804 kb on + strand, within AO356_24845 at 5631.804 kb on + strand, within AO356_24845 at 5631.804 kb on + strand, within AO356_24845 at 5632.045 kb on + strand at 5632.112 kb on + strand at 5632.216 kb on - strand, within AO356_24850 at 5632.261 kb on + strand, within AO356_24850 at 5632.262 kb on - strand, within AO356_24850 at 5632.475 kb on + strand, within AO356_24850 at 5632.476 kb on - strand, within AO356_24850 at 5632.715 kb on + strand at 5632.854 kb on + strand at 5632.864 kb on + strand at 5632.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 5,629,768 + AO356_24840 0.40 -1.4 5,629,768 + AO356_24840 0.40 -1.3 5,629,768 + AO356_24840 0.40 -0.9 5,629,768 + AO356_24840 0.40 -2.2 5,629,772 + AO356_24840 0.40 +0.8 5,629,841 + AO356_24840 0.51 -1.0 5,629,842 - AO356_24840 0.52 +0.4 5,629,848 - AO356_24840 0.52 +0.4 5,629,848 - AO356_24840 0.52 +0.8 5,629,848 - AO356_24840 0.52 +0.3 5,630,150 + -0.3 5,630,150 + +0.9 5,630,150 + +1.0 5,630,150 + -0.6 5,630,150 + -1.7 5,630,262 + +0.4 5,630,262 + +0.9 5,630,263 - +1.3 5,630,291 + +2.0 5,630,291 + +0.1 5,630,292 - +1.9 5,630,292 - +0.3 5,630,292 - -0.4 5,630,292 - +0.4 5,630,292 - -2.8 5,630,314 + +0.9 5,630,555 - +1.8 5,631,126 + AO356_24845 0.30 -2.0 5,631,798 + AO356_24845 0.81 -1.2 5,631,804 + AO356_24845 0.82 -1.4 5,631,804 + AO356_24845 0.82 -0.9 5,631,804 + AO356_24845 0.82 -2.2 5,632,045 + +0.6 5,632,112 + -2.0 5,632,216 - AO356_24850 0.23 +0.1 5,632,261 + AO356_24850 0.30 -0.4 5,632,262 - AO356_24850 0.30 -1.8 5,632,475 + AO356_24850 0.58 +0.3 5,632,476 - AO356_24850 0.59 +2.4 5,632,715 + -2.0 5,632,854 + -0.6 5,632,864 + +1.5 5,632,982 - +2.3
Or see this region's nucleotide sequence