Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21260

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21255 and AO356_21260 are separated by 180 nucleotidesAO356_21260 and AO356_21265 are separated by 83 nucleotides AO356_21255: AO356_21255 - alpha/beta hydrolase, at 4,770,537 to 4,771,367 _21255 AO356_21260: AO356_21260 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 4,771,548 to 4,771,904 _21260 AO356_21265: AO356_21265 - hypothetical protein, at 4,771,988 to 4,773,067 _21265 Position (kb) 4771 4772Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4770.838 kb on + strand, within AO356_21255at 4770.838 kb on + strand, within AO356_21255at 4770.889 kb on + strand, within AO356_21255at 4770.889 kb on + strand, within AO356_21255at 4770.889 kb on + strand, within AO356_21255at 4770.890 kb on - strand, within AO356_21255at 4770.890 kb on - strand, within AO356_21255at 4770.890 kb on - strand, within AO356_21255at 4770.890 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4770.964 kb on - strand, within AO356_21255at 4771.201 kb on + strand, within AO356_21255at 4771.202 kb on - strand, within AO356_21255at 4771.202 kb on - strand, within AO356_21255at 4771.202 kb on - strand, within AO356_21255at 4771.252 kb on + strand, within AO356_21255at 4771.253 kb on - strand, within AO356_21255at 4771.253 kb on - strand, within AO356_21255at 4771.253 kb on - strand, within AO356_21255at 4771.339 kb on + strandat 4771.340 kb on - strandat 4771.340 kb on - strandat 4771.374 kb on + strandat 4771.407 kb on + strandat 4771.408 kb on - strandat 4771.408 kb on - strandat 4771.497 kb on + strandat 4771.497 kb on + strandat 4771.498 kb on - strandat 4771.498 kb on - strandat 4771.562 kb on - strandat 4771.562 kb on - strandat 4771.697 kb on - strand, within AO356_21260at 4771.697 kb on - strand, within AO356_21260at 4771.919 kb on + strandat 4771.919 kb on + strandat 4771.920 kb on - strandat 4771.920 kb on - strandat 4771.920 kb on - strandat 4771.990 kb on - strandat 4772.170 kb on - strand, within AO356_21265at 4772.170 kb on - strand, within AO356_21265at 4772.308 kb on - strand, within AO356_21265at 4772.326 kb on - strand, within AO356_21265at 4772.349 kb on + strand, within AO356_21265at 4772.776 kb on - strand, within AO356_21265at 4772.776 kb on - strand, within AO356_21265at 4772.776 kb on - strand, within AO356_21265at 4772.776 kb on - strand, within AO356_21265at 4772.776 kb on - strand, within AO356_21265

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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4,770,838 + AO356_21255 0.36 +0.9
4,770,838 + AO356_21255 0.36 +0.0
4,770,889 + AO356_21255 0.42 -0.7
4,770,889 + AO356_21255 0.42 +0.4
4,770,889 + AO356_21255 0.42 -1.2
4,770,890 - AO356_21255 0.42 -1.6
4,770,890 - AO356_21255 0.42 -1.5
4,770,890 - AO356_21255 0.42 +1.1
4,770,890 - AO356_21255 0.42 -2.1
4,770,964 - AO356_21255 0.51 +0.1
4,770,964 - AO356_21255 0.51 +1.6
4,770,964 - AO356_21255 0.51 -0.1
4,770,964 - AO356_21255 0.51 +1.6
4,770,964 - AO356_21255 0.51 -1.0
4,770,964 - AO356_21255 0.51 +1.2
4,771,201 + AO356_21255 0.80 -1.3
4,771,202 - AO356_21255 0.80 -1.6
4,771,202 - AO356_21255 0.80 -2.4
4,771,202 - AO356_21255 0.80 +1.3
4,771,252 + AO356_21255 0.86 +0.5
4,771,253 - AO356_21255 0.86 -0.6
4,771,253 - AO356_21255 0.86 +0.1
4,771,253 - AO356_21255 0.86 -3.3
4,771,339 + +0.0
4,771,340 - +1.4
4,771,340 - +1.1
4,771,374 + +0.2
4,771,407 + +2.1
4,771,408 - +1.5
4,771,408 - -3.3
4,771,497 + -1.8
4,771,497 + +2.6
4,771,498 - +2.4
4,771,498 - +1.2
4,771,562 - +1.0
4,771,562 - +2.4
4,771,697 - AO356_21260 0.42 -2.0
4,771,697 - AO356_21260 0.42 -0.2
4,771,919 + -0.8
4,771,919 + -1.1
4,771,920 - +2.0
4,771,920 - -0.2
4,771,920 - +1.2
4,771,990 - +1.6
4,772,170 - AO356_21265 0.17 -0.6
4,772,170 - AO356_21265 0.17 +0.8
4,772,308 - AO356_21265 0.30 -0.1
4,772,326 - AO356_21265 0.31 -1.9
4,772,349 + AO356_21265 0.33 -0.1
4,772,776 - AO356_21265 0.73 +1.2
4,772,776 - AO356_21265 0.73 -1.1
4,772,776 - AO356_21265 0.73 -0.2
4,772,776 - AO356_21265 0.73 -3.1
4,772,776 - AO356_21265 0.73 +1.1

Or see this region's nucleotide sequence