Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21075 and AO356_21080 overlap by 8 nucleotides AO356_21080 and AO356_21085 are separated by 242 nucleotides
AO356_21075: AO356_21075 - glucoamylase, at 4,689,620 to 4,691,443
_21075
AO356_21080: AO356_21080 - sugar dehydrogenase, at 4,691,436 to 4,692,236
_21080
AO356_21085: AO356_21085 - cupin, at 4,692,479 to 4,693,612
_21085
Position (kb) 4691
4692
4693 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4690.564 kb on + strand, within AO356_21075 at 4690.565 kb on - strand, within AO356_21075 at 4690.565 kb on - strand, within AO356_21075 at 4690.566 kb on + strand, within AO356_21075 at 4690.566 kb on + strand, within AO356_21075 at 4690.566 kb on + strand, within AO356_21075 at 4690.567 kb on - strand, within AO356_21075 at 4690.567 kb on - strand, within AO356_21075 at 4690.913 kb on - strand, within AO356_21075 at 4690.913 kb on - strand, within AO356_21075 at 4690.913 kb on - strand, within AO356_21075 at 4691.050 kb on - strand, within AO356_21075 at 4691.226 kb on + strand, within AO356_21075 at 4691.227 kb on - strand, within AO356_21075 at 4691.227 kb on - strand, within AO356_21075 at 4691.227 kb on - strand, within AO356_21075 at 4691.506 kb on + strand at 4691.506 kb on + strand at 4691.743 kb on + strand, within AO356_21080 at 4691.743 kb on + strand, within AO356_21080 at 4692.124 kb on + strand, within AO356_21080 at 4692.124 kb on + strand, within AO356_21080 at 4692.125 kb on - strand, within AO356_21080 at 4692.125 kb on - strand, within AO356_21080 at 4692.228 kb on + strand at 4692.263 kb on + strand at 4692.263 kb on + strand at 4692.263 kb on + strand at 4692.264 kb on - strand at 4692.317 kb on + strand at 4692.364 kb on + strand at 4692.364 kb on + strand at 4692.364 kb on + strand at 4692.364 kb on + strand at 4692.364 kb on + strand at 4692.364 kb on + strand at 4692.364 kb on + strand at 4692.364 kb on + strand at 4692.364 kb on + strand at 4692.365 kb on - strand at 4692.365 kb on - strand at 4692.365 kb on - strand at 4692.365 kb on - strand at 4692.858 kb on + strand, within AO356_21085 at 4692.915 kb on + strand, within AO356_21085 at 4692.916 kb on - strand, within AO356_21085 at 4692.916 kb on - strand, within AO356_21085 at 4693.030 kb on - strand, within AO356_21085 at 4693.156 kb on - strand, within AO356_21085
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 4,690,564 + AO356_21075 0.52 -0.3 4,690,565 - AO356_21075 0.52 -0.7 4,690,565 - AO356_21075 0.52 -0.2 4,690,566 + AO356_21075 0.52 -2.3 4,690,566 + AO356_21075 0.52 -0.8 4,690,566 + AO356_21075 0.52 +0.8 4,690,567 - AO356_21075 0.52 +1.6 4,690,567 - AO356_21075 0.52 +0.5 4,690,913 - AO356_21075 0.71 -1.8 4,690,913 - AO356_21075 0.71 +0.1 4,690,913 - AO356_21075 0.71 -0.3 4,691,050 - AO356_21075 0.78 +0.2 4,691,226 + AO356_21075 0.88 -0.3 4,691,227 - AO356_21075 0.88 -1.4 4,691,227 - AO356_21075 0.88 +0.7 4,691,227 - AO356_21075 0.88 +0.4 4,691,506 + -0.5 4,691,506 + +2.8 4,691,743 + AO356_21080 0.38 -1.3 4,691,743 + AO356_21080 0.38 -1.2 4,692,124 + AO356_21080 0.86 +0.9 4,692,124 + AO356_21080 0.86 +0.0 4,692,125 - AO356_21080 0.86 +0.4 4,692,125 - AO356_21080 0.86 -1.3 4,692,228 + +1.2 4,692,263 + -0.3 4,692,263 + -1.0 4,692,263 + +0.4 4,692,264 - +2.1 4,692,317 + -1.8 4,692,364 + -0.9 4,692,364 + -1.9 4,692,364 + +0.7 4,692,364 + +0.9 4,692,364 + +0.6 4,692,364 + +1.5 4,692,364 + -2.2 4,692,364 + +1.4 4,692,364 + +2.8 4,692,365 - +1.7 4,692,365 - -2.4 4,692,365 - -0.4 4,692,365 - -1.2 4,692,858 + AO356_21085 0.33 -0.3 4,692,915 + AO356_21085 0.38 -1.4 4,692,916 - AO356_21085 0.39 +0.5 4,692,916 - AO356_21085 0.39 -0.3 4,693,030 - AO356_21085 0.49 -0.9 4,693,156 - AO356_21085 0.60 -0.8
Or see this region's nucleotide sequence