Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21070

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21065 and AO356_21070 are separated by 473 nucleotidesAO356_21070 and AO356_21075 are separated by 121 nucleotides AO356_21065: AO356_21065 - hypothetical protein, at 4,685,078 to 4,688,668 _21065 AO356_21070: AO356_21070 - hypothetical protein, at 4,689,142 to 4,689,498 _21070 AO356_21075: AO356_21075 - glucoamylase, at 4,689,620 to 4,691,443 _21075 Position (kb) 4689 4690Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 4688.246 kb on + strand, within AO356_21065at 4688.256 kb on + strand, within AO356_21065at 4688.257 kb on - strand, within AO356_21065at 4688.257 kb on - strand, within AO356_21065at 4688.296 kb on + strand, within AO356_21065at 4688.332 kb on + strandat 4688.333 kb on - strandat 4688.333 kb on - strandat 4688.433 kb on + strandat 4688.434 kb on - strandat 4688.461 kb on + strandat 4688.621 kb on + strandat 4688.621 kb on + strandat 4688.621 kb on + strandat 4688.621 kb on + strandat 4688.621 kb on + strandat 4688.622 kb on - strandat 4688.622 kb on - strandat 4688.630 kb on + strandat 4688.631 kb on - strandat 4688.631 kb on - strandat 4688.631 kb on - strandat 4688.666 kb on + strandat 4688.667 kb on - strandat 4688.779 kb on + strandat 4688.782 kb on - strandat 4689.077 kb on + strandat 4689.077 kb on + strandat 4689.077 kb on + strandat 4689.078 kb on - strandat 4689.080 kb on - strandat 4689.921 kb on + strand, within AO356_21075at 4690.107 kb on + strand, within AO356_21075at 4690.107 kb on + strand, within AO356_21075at 4690.108 kb on - strand, within AO356_21075at 4690.108 kb on - strand, within AO356_21075at 4690.342 kb on - strand, within AO356_21075at 4690.342 kb on - strand, within AO356_21075at 4690.404 kb on + strand, within AO356_21075

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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4,688,246 + AO356_21065 0.88 -0.3
4,688,256 + AO356_21065 0.88 -1.2
4,688,257 - AO356_21065 0.89 +1.2
4,688,257 - AO356_21065 0.89 +1.9
4,688,296 + AO356_21065 0.90 +1.6
4,688,332 + +2.9
4,688,333 - +1.5
4,688,333 - +0.8
4,688,433 + +0.3
4,688,434 - -1.6
4,688,461 + -0.4
4,688,621 + +2.3
4,688,621 + +1.9
4,688,621 + -1.1
4,688,621 + +0.6
4,688,621 + -1.3
4,688,622 - +1.1
4,688,622 - +0.7
4,688,630 + +0.1
4,688,631 - -0.5
4,688,631 - +0.9
4,688,631 - -0.3
4,688,666 + -0.9
4,688,667 - +0.5
4,688,779 + +0.3
4,688,782 - -1.1
4,689,077 + +4.3
4,689,077 + +4.9
4,689,077 + +8.8
4,689,078 - +1.4
4,689,080 - -2.5
4,689,921 + AO356_21075 0.17 +0.7
4,690,107 + AO356_21075 0.27 -2.6
4,690,107 + AO356_21075 0.27 +0.1
4,690,108 - AO356_21075 0.27 +0.3
4,690,108 - AO356_21075 0.27 +0.2
4,690,342 - AO356_21075 0.40 +1.6
4,690,342 - AO356_21075 0.40 +1.9
4,690,404 + AO356_21075 0.43 +0.3

Or see this region's nucleotide sequence