Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05740

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05730 and AO356_05735 overlap by 1 nucleotidesAO356_05735 and AO356_05740 are separated by 254 nucleotidesAO356_05740 and AO356_05745 are separated by 3 nucleotides AO356_05730: AO356_05730 - hypothetical protein, at 1,276,425 to 1,276,823 _05730 AO356_05735: AO356_05735 - hypothetical protein, at 1,276,823 to 1,277,332 _05735 AO356_05740: AO356_05740 - baseplate protein, at 1,277,587 to 1,278,627 _05740 AO356_05745: AO356_05745 - hydroxyacid dehydrogenase, at 1,278,631 to 1,279,869 _05745 Position (kb) 1277 1278 1279Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1276.868 kb on + strandat 1276.868 kb on + strandat 1276.869 kb on - strandat 1277.061 kb on + strand, within AO356_05735at 1277.324 kb on + strandat 1277.325 kb on - strandat 1277.623 kb on - strandat 1277.623 kb on - strandat 1277.675 kb on + strandat 1277.675 kb on + strandat 1277.675 kb on + strandat 1277.675 kb on + strandat 1277.675 kb on + strandat 1277.735 kb on - strand, within AO356_05740at 1277.792 kb on + strand, within AO356_05740at 1277.792 kb on + strand, within AO356_05740at 1277.792 kb on + strand, within AO356_05740at 1277.792 kb on + strand, within AO356_05740at 1277.793 kb on - strand, within AO356_05740at 1277.793 kb on - strand, within AO356_05740at 1277.996 kb on + strand, within AO356_05740at 1278.018 kb on - strand, within AO356_05740at 1278.018 kb on - strand, within AO356_05740at 1278.018 kb on - strand, within AO356_05740at 1278.064 kb on + strand, within AO356_05740at 1278.064 kb on + strand, within AO356_05740at 1278.064 kb on + strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.065 kb on - strand, within AO356_05740at 1278.390 kb on - strand, within AO356_05740at 1278.390 kb on - strand, within AO356_05740at 1278.390 kb on - strand, within AO356_05740at 1278.390 kb on - strand, within AO356_05740at 1278.413 kb on + strand, within AO356_05740at 1278.414 kb on - strand, within AO356_05740at 1278.414 kb on - strand, within AO356_05740at 1278.598 kb on - strandat 1278.598 kb on - strandat 1278.598 kb on - strandat 1278.598 kb on - strandat 1278.633 kb on - strandat 1278.691 kb on - strandat 1278.737 kb on + strandat 1278.738 kb on - strandat 1278.858 kb on - strand, within AO356_05745at 1279.307 kb on + strand, within AO356_05745at 1279.349 kb on + strand, within AO356_05745at 1279.349 kb on + strand, within AO356_05745at 1279.349 kb on + strand, within AO356_05745at 1279.350 kb on - strand, within AO356_05745at 1279.350 kb on - strand, within AO356_05745

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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1,276,868 + +0.8
1,276,868 + -0.0
1,276,869 - +0.9
1,277,061 + AO356_05735 0.47 +1.4
1,277,324 + +1.5
1,277,325 - -0.9
1,277,623 - +1.3
1,277,623 - -1.2
1,277,675 + -1.8
1,277,675 + +0.8
1,277,675 + +0.9
1,277,675 + +0.2
1,277,675 + +0.2
1,277,735 - AO356_05740 0.14 -0.5
1,277,792 + AO356_05740 0.20 +1.5
1,277,792 + AO356_05740 0.20 -0.6
1,277,792 + AO356_05740 0.20 +0.7
1,277,792 + AO356_05740 0.20 +0.4
1,277,793 - AO356_05740 0.20 +1.8
1,277,793 - AO356_05740 0.20 +0.5
1,277,996 + AO356_05740 0.39 +0.7
1,278,018 - AO356_05740 0.41 +1.0
1,278,018 - AO356_05740 0.41 -0.0
1,278,018 - AO356_05740 0.41 +0.9
1,278,064 + AO356_05740 0.46 -1.9
1,278,064 + AO356_05740 0.46 -0.7
1,278,064 + AO356_05740 0.46 +0.6
1,278,065 - AO356_05740 0.46 +0.5
1,278,065 - AO356_05740 0.46 -3.6
1,278,065 - AO356_05740 0.46 +0.1
1,278,065 - AO356_05740 0.46 -0.8
1,278,065 - AO356_05740 0.46 +0.1
1,278,065 - AO356_05740 0.46 +1.0
1,278,390 - AO356_05740 0.77 -1.8
1,278,390 - AO356_05740 0.77 -0.6
1,278,390 - AO356_05740 0.77 -1.7
1,278,390 - AO356_05740 0.77 +1.1
1,278,413 + AO356_05740 0.79 +0.6
1,278,414 - AO356_05740 0.79 -0.4
1,278,414 - AO356_05740 0.79 -0.1
1,278,598 - -2.3
1,278,598 - -1.6
1,278,598 - -0.4
1,278,598 - +0.3
1,278,633 - -2.3
1,278,691 - +1.5
1,278,737 + -1.5
1,278,738 - +2.7
1,278,858 - AO356_05745 0.18 +0.5
1,279,307 + AO356_05745 0.55 +1.1
1,279,349 + AO356_05745 0.58 -1.5
1,279,349 + AO356_05745 0.58 +0.7
1,279,349 + AO356_05745 0.58 +0.9
1,279,350 - AO356_05745 0.58 -2.5
1,279,350 - AO356_05745 0.58 +0.6

Or see this region's nucleotide sequence