Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04325

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04320 and AO356_04325 are separated by 104 nucleotidesAO356_04325 and AO356_04330 overlap by 4 nucleotidesAO356_04330 and AO356_04335 overlap by 4 nucleotides AO356_04320: AO356_04320 - hypothetical protein, at 983,932 to 985,110 _04320 AO356_04325: AO356_04325 - allophanate hydrolase, at 985,215 to 986,135 _04325 AO356_04330: AO356_04330 - allophanate hydrolase, at 986,132 to 986,836 _04330 AO356_04335: AO356_04335 - hypothetical protein, at 986,833 to 987,585 _04335 Position (kb) 985 986 987Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 984.442 kb on + strand, within AO356_04320at 984.443 kb on - strand, within AO356_04320at 984.510 kb on + strand, within AO356_04320at 984.510 kb on + strand, within AO356_04320at 984.511 kb on - strand, within AO356_04320at 984.730 kb on + strand, within AO356_04320at 984.731 kb on - strand, within AO356_04320at 984.731 kb on - strand, within AO356_04320at 984.731 kb on - strand, within AO356_04320at 984.731 kb on - strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.736 kb on + strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.737 kb on - strand, within AO356_04320at 984.754 kb on + strand, within AO356_04320at 984.754 kb on + strand, within AO356_04320at 984.754 kb on + strand, within AO356_04320at 984.826 kb on + strand, within AO356_04320at 984.826 kb on + strand, within AO356_04320at 984.827 kb on - strand, within AO356_04320at 984.827 kb on - strand, within AO356_04320at 984.827 kb on - strand, within AO356_04320at 984.827 kb on - strand, within AO356_04320at 984.827 kb on - strand, within AO356_04320at 984.838 kb on + strand, within AO356_04320at 984.839 kb on - strand, within AO356_04320at 984.877 kb on + strand, within AO356_04320at 984.878 kb on - strand, within AO356_04320at 984.932 kb on - strand, within AO356_04320at 984.932 kb on - strand, within AO356_04320at 984.961 kb on + strand, within AO356_04320at 984.961 kb on + strand, within AO356_04320at 984.961 kb on + strand, within AO356_04320at 984.962 kb on - strand, within AO356_04320at 984.962 kb on - strand, within AO356_04320at 984.962 kb on - strand, within AO356_04320at 984.989 kb on - strand, within AO356_04320at 985.011 kb on + strandat 985.011 kb on + strandat 985.011 kb on + strandat 985.058 kb on - strandat 985.058 kb on - strandat 985.058 kb on - strandat 985.108 kb on + strandat 985.108 kb on + strandat 985.174 kb on + strandat 985.174 kb on + strandat 985.174 kb on + strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.175 kb on - strandat 985.178 kb on + strandat 985.178 kb on + strandat 985.178 kb on + strandat 985.178 kb on + strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.179 kb on - strandat 985.439 kb on + strand, within AO356_04325at 985.440 kb on - strand, within AO356_04325at 985.440 kb on - strand, within AO356_04325at 985.468 kb on + strand, within AO356_04325at 985.670 kb on - strand, within AO356_04325at 985.795 kb on + strand, within AO356_04325at 985.887 kb on + strand, within AO356_04325at 985.888 kb on - strand, within AO356_04325at 985.949 kb on + strand, within AO356_04325at 986.235 kb on + strand, within AO356_04330at 986.235 kb on + strand, within AO356_04330at 986.408 kb on + strand, within AO356_04330at 986.408 kb on + strand, within AO356_04330at 986.457 kb on + strand, within AO356_04330at 986.457 kb on + strand, within AO356_04330at 986.550 kb on + strand, within AO356_04330at 986.664 kb on + strand, within AO356_04330at 986.664 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.685 kb on + strand, within AO356_04330at 986.919 kb on + strand, within AO356_04335at 986.919 kb on + strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 986.920 kb on - strand, within AO356_04335at 987.108 kb on - strand, within AO356_04335

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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984,442 + AO356_04320 0.43 +1.6
984,443 - AO356_04320 0.43 -2.6
984,510 + AO356_04320 0.49 +1.4
984,510 + AO356_04320 0.49 +1.1
984,511 - AO356_04320 0.49 -2.0
984,730 + AO356_04320 0.68 +0.1
984,731 - AO356_04320 0.68 -3.1
984,731 - AO356_04320 0.68 +0.6
984,731 - AO356_04320 0.68 -0.2
984,731 - AO356_04320 0.68 -0.8
984,736 + AO356_04320 0.68 +2.2
984,736 + AO356_04320 0.68 +1.3
984,736 + AO356_04320 0.68 -0.0
984,736 + AO356_04320 0.68 +0.5
984,736 + AO356_04320 0.68 +1.9
984,736 + AO356_04320 0.68 +1.2
984,737 - AO356_04320 0.68 +1.2
984,737 - AO356_04320 0.68 -0.2
984,737 - AO356_04320 0.68 +0.5
984,737 - AO356_04320 0.68 -1.0
984,737 - AO356_04320 0.68 -0.8
984,737 - AO356_04320 0.68 -1.6
984,737 - AO356_04320 0.68 -1.3
984,737 - AO356_04320 0.68 +1.1
984,737 - AO356_04320 0.68 -0.8
984,754 + AO356_04320 0.70 -2.4
984,754 + AO356_04320 0.70 +1.2
984,754 + AO356_04320 0.70 -2.5
984,826 + AO356_04320 0.76 +0.3
984,826 + AO356_04320 0.76 +0.6
984,827 - AO356_04320 0.76 -0.5
984,827 - AO356_04320 0.76 +0.8
984,827 - AO356_04320 0.76 -0.2
984,827 - AO356_04320 0.76 -0.2
984,827 - AO356_04320 0.76 -0.1
984,838 + AO356_04320 0.77 -1.9
984,839 - AO356_04320 0.77 +0.4
984,877 + AO356_04320 0.80 -0.3
984,878 - AO356_04320 0.80 +0.0
984,932 - AO356_04320 0.85 -0.3
984,932 - AO356_04320 0.85 -0.3
984,961 + AO356_04320 0.87 -0.1
984,961 + AO356_04320 0.87 +0.4
984,961 + AO356_04320 0.87 +0.8
984,962 - AO356_04320 0.87 -1.0
984,962 - AO356_04320 0.87 +0.7
984,962 - AO356_04320 0.87 +0.3
984,989 - AO356_04320 0.90 +1.1
985,011 + +0.3
985,011 + -1.1
985,011 + -0.2
985,058 - +1.2
985,058 - -1.1
985,058 - -0.7
985,108 + +0.1
985,108 + -1.8
985,174 + +1.4
985,174 + +1.5
985,174 + -1.8
985,175 - +2.0
985,175 - +1.2
985,175 - -1.4
985,175 - +1.4
985,175 - -0.2
985,175 - -0.7
985,175 - +1.2
985,175 - +0.2
985,175 - -3.1
985,178 + -1.8
985,178 + +1.1
985,178 + -0.6
985,178 + -2.4
985,179 - +1.9
985,179 - -2.4
985,179 - -2.9
985,179 - +0.5
985,179 - -1.5
985,179 - +2.1
985,179 - +1.3
985,439 + AO356_04325 0.24 -2.2
985,440 - AO356_04325 0.24 +2.2
985,440 - AO356_04325 0.24 -2.7
985,468 + AO356_04325 0.27 +0.6
985,670 - AO356_04325 0.49 -1.3
985,795 + AO356_04325 0.63 -0.7
985,887 + AO356_04325 0.73 +0.2
985,888 - AO356_04325 0.73 +1.2
985,949 + AO356_04325 0.80 +0.4
986,235 + AO356_04330 0.15 -1.0
986,235 + AO356_04330 0.15 +0.8
986,408 + AO356_04330 0.39 -0.9
986,408 + AO356_04330 0.39 -2.2
986,457 + AO356_04330 0.46 -0.2
986,457 + AO356_04330 0.46 -1.7
986,550 + AO356_04330 0.59 -2.9
986,664 + AO356_04330 0.75 -2.9
986,664 + AO356_04330 0.75 +1.2
986,685 + AO356_04330 0.78 +0.0
986,685 + AO356_04330 0.78 +0.7
986,685 + AO356_04330 0.78 -2.1
986,919 + AO356_04335 0.11 -1.7
986,919 + AO356_04335 0.11 +0.4
986,920 - AO356_04335 0.12 +0.5
986,920 - AO356_04335 0.12 -1.5
986,920 - AO356_04335 0.12 -1.7
986,920 - AO356_04335 0.12 -0.2
986,920 - AO356_04335 0.12 +1.7
987,108 - AO356_04335 0.37 -1.9

Or see this region's nucleotide sequence