Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01940

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01935 and AO356_01940 are separated by 254 nucleotides AO356_01935: AO356_01935 - biotin synthase, at 428,790 to 430,010 _01935 AO356_01940: AO356_01940 - hypothetical protein, at 430,265 to 430,588 _01940 Position (kb) 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 429.265 kb on + strand, within AO356_01935at 429.265 kb on + strand, within AO356_01935at 429.265 kb on + strand, within AO356_01935at 429.266 kb on - strand, within AO356_01935at 429.266 kb on - strand, within AO356_01935at 429.322 kb on + strand, within AO356_01935at 429.556 kb on - strand, within AO356_01935at 429.590 kb on + strand, within AO356_01935at 429.592 kb on + strand, within AO356_01935at 429.592 kb on + strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.637 kb on - strand, within AO356_01935at 429.656 kb on - strand, within AO356_01935at 429.656 kb on - strand, within AO356_01935at 429.796 kb on + strand, within AO356_01935at 429.796 kb on + strand, within AO356_01935at 429.796 kb on + strand, within AO356_01935at 429.809 kb on - strand, within AO356_01935at 429.809 kb on - strand, within AO356_01935at 429.866 kb on + strand, within AO356_01935at 429.867 kb on - strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.872 kb on + strand, within AO356_01935at 429.872 kb on + strand, within AO356_01935at 429.872 kb on + strand, within AO356_01935at 429.872 kb on + strand, within AO356_01935at 429.873 kb on - strand, within AO356_01935at 429.881 kb on + strand, within AO356_01935at 429.881 kb on + strand, within AO356_01935at 429.881 kb on + strand, within AO356_01935at 429.882 kb on - strand, within AO356_01935at 429.882 kb on - strand, within AO356_01935at 429.926 kb on + strandat 429.926 kb on + strandat 429.926 kb on + strandat 429.926 kb on + strandat 429.927 kb on - strandat 429.927 kb on - strandat 429.964 kb on + strandat 429.965 kb on - strandat 430.001 kb on + strandat 430.034 kb on + strandat 430.117 kb on + strandat 430.117 kb on + strandat 430.117 kb on + strandat 430.140 kb on + strandat 430.140 kb on + strandat 430.140 kb on + strandat 430.141 kb on - strandat 430.142 kb on + strandat 430.210 kb on + strandat 430.211 kb on - strandat 430.211 kb on - strandat 430.237 kb on + strandat 430.238 kb on - strandat 430.534 kb on - strand, within AO356_01940at 430.534 kb on - strand, within AO356_01940at 430.626 kb on - strandat 430.636 kb on + strandat 430.637 kb on - strandat 430.637 kb on - strandat 430.654 kb on + strandat 430.654 kb on + strandat 430.655 kb on - strandat 430.754 kb on + strandat 430.840 kb on - strandat 430.840 kb on - strandat 431.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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429,265 + AO356_01935 0.39 -1.0
429,265 + AO356_01935 0.39 -0.7
429,265 + AO356_01935 0.39 -0.7
429,266 - AO356_01935 0.39 +0.3
429,266 - AO356_01935 0.39 -1.6
429,322 + AO356_01935 0.44 -2.0
429,556 - AO356_01935 0.63 -0.1
429,590 + AO356_01935 0.66 +0.3
429,592 + AO356_01935 0.66 +1.5
429,592 + AO356_01935 0.66 +1.7
429,593 - AO356_01935 0.66 +0.6
429,593 - AO356_01935 0.66 -1.0
429,593 - AO356_01935 0.66 -0.2
429,593 - AO356_01935 0.66 -1.6
429,593 - AO356_01935 0.66 +0.4
429,593 - AO356_01935 0.66 -1.1
429,593 - AO356_01935 0.66 +0.9
429,637 - AO356_01935 0.69 +0.3
429,656 - AO356_01935 0.71 +0.5
429,656 - AO356_01935 0.71 +1.0
429,796 + AO356_01935 0.82 -0.3
429,796 + AO356_01935 0.82 +1.6
429,796 + AO356_01935 0.82 +1.8
429,809 - AO356_01935 0.83 -2.3
429,809 - AO356_01935 0.83 -0.7
429,866 + AO356_01935 0.88 -1.3
429,867 - AO356_01935 0.88 +2.7
429,868 + AO356_01935 0.88 +1.5
429,868 + AO356_01935 0.88 -1.9
429,868 + AO356_01935 0.88 +0.9
429,868 + AO356_01935 0.88 +1.4
429,868 + AO356_01935 0.88 +0.5
429,868 + AO356_01935 0.88 +1.8
429,868 + AO356_01935 0.88 +0.1
429,868 + AO356_01935 0.88 -1.2
429,868 + AO356_01935 0.88 +1.8
429,868 + AO356_01935 0.88 -0.6
429,868 + AO356_01935 0.88 -1.9
429,868 + AO356_01935 0.88 -0.3
429,868 + AO356_01935 0.88 +1.0
429,868 + AO356_01935 0.88 -1.7
429,868 + AO356_01935 0.88 -0.2
429,868 + AO356_01935 0.88 -1.8
429,869 - AO356_01935 0.88 -2.3
429,869 - AO356_01935 0.88 +0.3
429,869 - AO356_01935 0.88 -0.6
429,869 - AO356_01935 0.88 +0.3
429,869 - AO356_01935 0.88 -1.7
429,869 - AO356_01935 0.88 -0.2
429,869 - AO356_01935 0.88 +1.5
429,869 - AO356_01935 0.88 +1.3
429,869 - AO356_01935 0.88 -0.6
429,869 - AO356_01935 0.88 -0.4
429,869 - AO356_01935 0.88 -0.4
429,869 - AO356_01935 0.88 +0.0
429,869 - AO356_01935 0.88 +0.1
429,869 - AO356_01935 0.88 -0.8
429,869 - AO356_01935 0.88 -0.4
429,869 - AO356_01935 0.88 -1.8
429,869 - AO356_01935 0.88 +0.8
429,869 - AO356_01935 0.88 -0.6
429,872 + AO356_01935 0.89 -3.0
429,872 + AO356_01935 0.89 +0.7
429,872 + AO356_01935 0.89 +1.0
429,872 + AO356_01935 0.89 -1.0
429,873 - AO356_01935 0.89 +1.6
429,881 + AO356_01935 0.89 -0.3
429,881 + AO356_01935 0.89 -2.2
429,881 + AO356_01935 0.89 +0.7
429,882 - AO356_01935 0.89 -0.5
429,882 - AO356_01935 0.89 -0.3
429,926 + +1.4
429,926 + -1.5
429,926 + +0.1
429,926 + -1.3
429,927 - -0.3
429,927 - +0.5
429,964 + +0.1
429,965 - +1.0
430,001 + -1.2
430,034 + +1.1
430,117 + +1.0
430,117 + -0.5
430,117 + -1.3
430,140 + +0.2
430,140 + -1.5
430,140 + +0.2
430,141 - +0.2
430,142 + -1.8
430,210 + -0.3
430,211 - -0.3
430,211 - +0.3
430,237 + +0.9
430,238 - +2.7
430,534 - AO356_01940 0.83 -1.6
430,534 - AO356_01940 0.83 -1.1
430,626 - +2.0
430,636 + +0.5
430,637 - -1.1
430,637 - -2.5
430,654 + -0.5
430,654 + -0.1
430,655 - -0.7
430,754 + -1.5
430,840 - +2.3
430,840 - +0.6
431,076 - +1.1

Or see this region's nucleotide sequence