Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00615 and AO356_00620 are separated by 29 nucleotides AO356_00620 and AO356_00625 are separated by 139 nucleotides
AO356_00615: AO356_00615 - choline ABC transporter ATP-binding protein, at 131,629 to 132,852
_00615
AO356_00620: AO356_00620 - LysR family transcriptional regulator, at 132,882 to 133,820
_00620
AO356_00625: AO356_00625 - (Fe-S)-binding protein, at 133,960 to 135,216
_00625
Position (kb) 132
133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.373 kb on + strand, within AO356_00615 at 132.395 kb on + strand, within AO356_00615 at 132.396 kb on - strand, within AO356_00615 at 132.416 kb on - strand, within AO356_00615 at 132.514 kb on + strand, within AO356_00615 at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 133.116 kb on + strand, within AO356_00620 at 133.116 kb on + strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.243 kb on + strand, within AO356_00620 at 133.244 kb on - strand, within AO356_00620 at 133.244 kb on - strand, within AO356_00620 at 133.326 kb on + strand, within AO356_00620 at 133.596 kb on + strand, within AO356_00620 at 133.596 kb on + strand, within AO356_00620 at 133.596 kb on + strand, within AO356_00620 at 133.697 kb on + strand, within AO356_00620 at 133.698 kb on - strand, within AO356_00620 at 133.728 kb on + strand at 133.729 kb on - strand at 133.729 kb on - strand at 133.731 kb on + strand at 133.732 kb on - strand at 133.732 kb on - strand at 133.732 kb on - strand at 133.732 kb on - strand at 134.285 kb on - strand, within AO356_00625 at 134.299 kb on + strand, within AO356_00625 at 134.482 kb on + strand, within AO356_00625 at 134.483 kb on - strand, within AO356_00625 at 134.510 kb on - strand, within AO356_00625 at 134.510 kb on - strand, within AO356_00625 at 134.573 kb on - strand, within AO356_00625 at 134.728 kb on + strand, within AO356_00625 at 134.729 kb on - strand, within AO356_00625
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 132,373 + AO356_00615 0.61 +0.0 132,395 + AO356_00615 0.63 -0.1 132,396 - AO356_00615 0.63 +1.4 132,416 - AO356_00615 0.64 -2.2 132,514 + AO356_00615 0.72 +1.1 132,881 + +1.3 132,881 + +2.0 132,881 + +0.9 132,881 + +1.2 132,881 + -3.3 132,881 + +1.0 132,881 + +2.3 132,881 + -0.3 132,882 - +0.2 132,882 - +1.5 132,882 - -0.7 132,882 - +0.4 132,882 - +0.9 132,882 - -0.1 132,882 - -2.0 133,116 + AO356_00620 0.25 -1.0 133,116 + AO356_00620 0.25 -1.5 133,117 - AO356_00620 0.25 +1.2 133,117 - AO356_00620 0.25 -1.4 133,117 - AO356_00620 0.25 +0.2 133,117 - AO356_00620 0.25 +0.6 133,117 - AO356_00620 0.25 -1.8 133,117 - AO356_00620 0.25 -2.3 133,243 + AO356_00620 0.38 +0.7 133,244 - AO356_00620 0.39 +1.5 133,244 - AO356_00620 0.39 +1.2 133,326 + AO356_00620 0.47 -2.7 133,596 + AO356_00620 0.76 -0.8 133,596 + AO356_00620 0.76 +2.6 133,596 + AO356_00620 0.76 -2.5 133,697 + AO356_00620 0.87 +0.6 133,698 - AO356_00620 0.87 -1.4 133,728 + -1.3 133,729 - +0.8 133,729 - +1.4 133,731 + +2.5 133,732 - +0.8 133,732 - -0.8 133,732 - -0.4 133,732 - +0.3 134,285 - AO356_00625 0.26 +1.2 134,299 + AO356_00625 0.27 +0.9 134,482 + AO356_00625 0.42 +0.1 134,483 - AO356_00625 0.42 +1.0 134,510 - AO356_00625 0.44 +0.3 134,510 - AO356_00625 0.44 +2.2 134,573 - AO356_00625 0.49 +0.9 134,728 + AO356_00625 0.61 -0.3 134,729 - AO356_00625 0.61 -0.4
Or see this region's nucleotide sequence