Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00300 and AO356_00305 are separated by 494 nucleotides AO356_00305 and AO356_00310 are separated by 211 nucleotides AO356_00310 and AO356_00315 overlap by 8 nucleotides
AO356_00300: AO356_00300 - relaxase, at 54,440 to 56,164
_00300
AO356_00305: AO356_00305 - hypothetical protein, at 56,659 to 57,279
_00305
AO356_00310: AO356_00310 - hypothetical protein, at 57,491 to 58,111
_00310
AO356_00315: AO356_00315 - nucleotidyltransferase, at 58,104 to 59,387
_00315
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 55.682 kb on + strand, within AO356_00300 at 55.683 kb on - strand, within AO356_00300 at 55.683 kb on - strand, within AO356_00300 at 55.703 kb on - strand, within AO356_00300 at 55.703 kb on - strand, within AO356_00300 at 55.703 kb on - strand, within AO356_00300 at 55.885 kb on - strand, within AO356_00300 at 55.937 kb on - strand, within AO356_00300 at 55.937 kb on - strand, within AO356_00300 at 56.080 kb on + strand at 56.088 kb on - strand at 56.112 kb on + strand at 56.113 kb on - strand at 56.155 kb on - strand at 56.173 kb on - strand at 56.175 kb on + strand at 56.175 kb on + strand at 56.180 kb on + strand at 56.181 kb on - strand at 56.212 kb on - strand at 56.214 kb on + strand at 56.244 kb on + strand at 56.245 kb on - strand at 56.280 kb on + strand at 56.281 kb on - strand at 56.281 kb on - strand at 56.281 kb on - strand at 56.374 kb on + strand at 56.374 kb on + strand at 56.374 kb on + strand at 56.375 kb on - strand at 56.375 kb on - strand at 56.375 kb on - strand at 56.404 kb on + strand at 56.404 kb on + strand at 56.405 kb on - strand at 56.407 kb on + strand at 56.407 kb on + strand at 56.407 kb on + strand at 56.407 kb on + strand at 56.407 kb on + strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.487 kb on + strand at 56.487 kb on + strand at 56.560 kb on - strand at 56.560 kb on - strand at 56.579 kb on - strand at 56.595 kb on + strand at 56.596 kb on - strand at 56.716 kb on + strand at 56.717 kb on - strand at 56.787 kb on + strand, within AO356_00305 at 56.850 kb on + strand, within AO356_00305 at 56.851 kb on - strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.927 kb on + strand, within AO356_00305 at 56.928 kb on - strand, within AO356_00305 at 56.944 kb on + strand, within AO356_00305 at 56.944 kb on + strand, within AO356_00305 at 56.965 kb on + strand, within AO356_00305 at 56.986 kb on + strand, within AO356_00305 at 56.986 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.997 kb on + strand, within AO356_00305 at 57.142 kb on - strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.186 kb on - strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.201 kb on - strand, within AO356_00305 at 57.203 kb on + strand, within AO356_00305 at 57.204 kb on - strand, within AO356_00305 at 57.234 kb on + strand at 57.234 kb on + strand at 57.234 kb on + strand at 57.234 kb on + strand at 57.235 kb on - strand at 57.235 kb on - strand at 57.241 kb on + strand at 57.242 kb on - strand at 57.267 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.320 kb on - strand at 57.320 kb on - strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.338 kb on + strand at 57.338 kb on + strand at 57.338 kb on + strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.347 kb on + strand at 57.348 kb on - strand at 57.394 kb on - strand at 57.394 kb on - strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.435 kb on - strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.454 kb on - strand at 57.483 kb on + strand at 57.484 kb on - strand at 57.484 kb on - strand at 57.484 kb on - strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.489 kb on - strand at 57.489 kb on - strand at 57.489 kb on - strand at 57.490 kb on + strand at 57.490 kb on + strand at 57.533 kb on + strand at 57.534 kb on - strand at 57.546 kb on - strand at 57.572 kb on + strand, within AO356_00310 at 57.707 kb on + strand, within AO356_00310 at 57.708 kb on - strand, within AO356_00310 at 57.708 kb on - strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.719 kb on + strand, within AO356_00310 at 57.720 kb on - strand, within AO356_00310 at 57.720 kb on - strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.741 kb on - strand, within AO356_00310 at 57.741 kb on - strand, within AO356_00310 at 57.846 kb on + strand, within AO356_00310 at 57.846 kb on + strand, within AO356_00310 at 58.015 kb on - strand, within AO356_00310 at 58.109 kb on + strand at 58.109 kb on + strand at 58.109 kb on + strand at 58.110 kb on - strand at 58.209 kb on + strand at 58.212 kb on + strand at 58.212 kb on + strand at 58.213 kb on - strand at 58.213 kb on - strand at 58.218 kb on - strand at 58.249 kb on + strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.257 kb on + strand, within AO356_00315 at 58.257 kb on + strand, within AO356_00315
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 55,682 + AO356_00300 0.72 -0.1 55,683 - AO356_00300 0.72 +0.2 55,683 - AO356_00300 0.72 +1.2 55,703 - AO356_00300 0.73 -0.2 55,703 - AO356_00300 0.73 +0.3 55,703 - AO356_00300 0.73 +0.1 55,885 - AO356_00300 0.84 +0.0 55,937 - AO356_00300 0.87 -0.2 55,937 - AO356_00300 0.87 +0.7 56,080 + -0.7 56,088 - +1.0 56,112 + -0.2 56,113 - -0.0 56,155 - +1.2 56,173 - -0.3 56,175 + +1.0 56,175 + +2.6 56,180 + -0.4 56,181 - -1.6 56,212 - -1.1 56,214 + +1.1 56,244 + -1.0 56,245 - +1.0 56,280 + -2.3 56,281 - +1.2 56,281 - -0.2 56,281 - +0.7 56,374 + +0.6 56,374 + -1.0 56,374 + +0.2 56,375 - -1.2 56,375 - -0.8 56,375 - +1.5 56,404 + -1.2 56,404 + +0.2 56,405 - +1.0 56,407 + -0.3 56,407 + +0.0 56,407 + +0.3 56,407 + +0.6 56,407 + +0.2 56,408 - -2.8 56,408 - +1.6 56,408 - +0.2 56,408 - +0.4 56,408 - -1.4 56,408 - +0.7 56,408 - -0.7 56,408 - -0.0 56,408 - +1.4 56,487 + +0.7 56,487 + +0.1 56,560 - -0.5 56,560 - -2.3 56,579 - -1.8 56,595 + -1.7 56,596 - +1.4 56,716 + +0.8 56,717 - +1.9 56,787 + AO356_00305 0.21 +0.9 56,850 + AO356_00305 0.31 +3.9 56,851 - AO356_00305 0.31 -0.0 56,885 + AO356_00305 0.36 -0.3 56,885 + AO356_00305 0.36 -1.8 56,885 + AO356_00305 0.36 +1.3 56,885 + AO356_00305 0.36 +1.2 56,886 - AO356_00305 0.37 -2.0 56,886 - AO356_00305 0.37 -0.5 56,886 - AO356_00305 0.37 -1.1 56,903 + AO356_00305 0.39 -0.2 56,903 + AO356_00305 0.39 +0.9 56,903 + AO356_00305 0.39 -1.6 56,904 - AO356_00305 0.39 +0.8 56,904 - AO356_00305 0.39 -0.4 56,904 - AO356_00305 0.39 +1.3 56,904 - AO356_00305 0.39 -0.1 56,927 + AO356_00305 0.43 -1.3 56,928 - AO356_00305 0.43 +1.4 56,944 + AO356_00305 0.46 +0.3 56,944 + AO356_00305 0.46 -0.5 56,965 + AO356_00305 0.49 -1.4 56,986 + AO356_00305 0.53 +0.5 56,986 + AO356_00305 0.53 +0.9 56,990 + AO356_00305 0.53 +0.9 56,990 + AO356_00305 0.53 -0.1 56,990 + AO356_00305 0.53 -1.4 56,990 + AO356_00305 0.53 +1.5 56,991 - AO356_00305 0.53 +1.4 56,991 - AO356_00305 0.53 -0.9 56,991 - AO356_00305 0.53 -0.3 56,993 + AO356_00305 0.54 +0.8 56,993 + AO356_00305 0.54 +0.6 56,993 + AO356_00305 0.54 +1.2 56,993 + AO356_00305 0.54 -1.7 56,993 + AO356_00305 0.54 +0.0 56,993 + AO356_00305 0.54 -0.3 56,994 - AO356_00305 0.54 +1.3 56,994 - AO356_00305 0.54 -0.7 56,994 - AO356_00305 0.54 -1.9 56,997 + AO356_00305 0.54 +0.0 57,142 - AO356_00305 0.78 -0.3 57,185 + AO356_00305 0.85 +0.0 57,185 + AO356_00305 0.85 +0.6 57,185 + AO356_00305 0.85 -2.1 57,185 + AO356_00305 0.85 +0.9 57,185 + AO356_00305 0.85 -1.5 57,186 - AO356_00305 0.85 +2.3 57,200 + AO356_00305 0.87 +0.8 57,200 + AO356_00305 0.87 +0.3 57,200 + AO356_00305 0.87 -0.2 57,200 + AO356_00305 0.87 -2.2 57,201 - AO356_00305 0.87 -0.6 57,203 + AO356_00305 0.88 -0.9 57,204 - AO356_00305 0.88 -0.2 57,234 + -1.2 57,234 + -1.1 57,234 + -1.4 57,234 + -1.5 57,235 - +0.3 57,235 - -1.7 57,241 + +1.4 57,242 - -2.1 57,267 + -0.9 57,317 + +1.6 57,317 + -1.6 57,317 + +0.5 57,317 + -0.0 57,317 + +0.9 57,318 - +0.3 57,318 - -0.4 57,318 - +1.2 57,318 - -0.2 57,320 - -0.4 57,320 - -0.3 57,329 + -0.4 57,329 + +0.8 57,329 + -0.1 57,329 + -3.7 57,338 + +0.9 57,338 + -0.0 57,338 + +1.0 57,339 - -1.8 57,339 - -1.6 57,339 - +0.9 57,339 - -2.2 57,347 + -1.6 57,348 - +0.3 57,394 - +1.5 57,394 - +1.0 57,434 + +0.6 57,434 + -2.3 57,434 + +1.2 57,434 + -0.8 57,434 + +0.8 57,434 + -1.5 57,434 + -0.2 57,435 - -1.6 57,436 + -0.8 57,436 + +1.2 57,436 + +0.7 57,436 + +0.6 57,436 + -0.4 57,437 - +1.7 57,437 - +0.3 57,437 - +1.8 57,437 - +1.2 57,437 - +0.2 57,437 - -1.9 57,437 - -1.5 57,437 - -0.8 57,438 + +1.3 57,438 + -0.4 57,438 + +0.7 57,438 + +1.6 57,438 + -0.6 57,439 - -2.1 57,439 - -0.2 57,439 - +1.0 57,439 - -0.2 57,439 - +0.3 57,439 - +0.2 57,439 - +1.4 57,439 - -0.4 57,439 - +0.3 57,439 - -2.1 57,439 - +3.2 57,439 - +0.9 57,439 - +0.8 57,454 - +1.6 57,483 + -0.7 57,484 - +1.6 57,484 - -0.4 57,484 - -2.9 57,488 + -1.7 57,488 + +0.6 57,488 + +1.6 57,488 + +1.1 57,488 + -1.2 57,489 - -0.2 57,489 - +2.2 57,489 - -0.8 57,490 + +0.7 57,490 + -1.7 57,533 + -2.0 57,534 - -0.2 57,546 - -1.5 57,572 + AO356_00310 0.13 -0.1 57,707 + AO356_00310 0.35 -2.1 57,708 - AO356_00310 0.35 +1.5 57,708 - AO356_00310 0.35 +0.7 57,716 + AO356_00310 0.36 -1.0 57,716 + AO356_00310 0.36 +1.6 57,716 + AO356_00310 0.36 +0.9 57,716 + AO356_00310 0.36 -0.1 57,717 - AO356_00310 0.36 +0.8 57,717 - AO356_00310 0.36 +1.4 57,717 - AO356_00310 0.36 +0.2 57,717 - AO356_00310 0.36 +1.8 57,719 + AO356_00310 0.37 -0.3 57,720 - AO356_00310 0.37 -1.2 57,720 - AO356_00310 0.37 -2.0 57,740 + AO356_00310 0.40 +0.0 57,740 + AO356_00310 0.40 +0.1 57,740 + AO356_00310 0.40 -0.2 57,741 - AO356_00310 0.40 +1.1 57,741 - AO356_00310 0.40 -0.6 57,846 + AO356_00310 0.57 -3.2 57,846 + AO356_00310 0.57 +0.8 58,015 - AO356_00310 0.84 +1.0 58,109 + +1.9 58,109 + +0.4 58,109 + -0.1 58,110 - -3.2 58,209 + +1.1 58,212 + -0.2 58,212 + +1.0 58,213 - -1.4 58,213 - +1.4 58,218 - +1.3 58,249 + AO356_00315 0.11 -1.0 58,250 - AO356_00315 0.11 +0.2 58,250 - AO356_00315 0.11 +1.1 58,250 - AO356_00315 0.11 -0.3 58,250 - AO356_00315 0.11 -2.0 58,257 + AO356_00315 0.12 -1.1 58,257 + AO356_00315 0.12 +1.9
Or see this region's nucleotide sequence