Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26600 and AO353_26605 overlap by 4 nucleotides AO353_26605 and AO353_26610 are separated by 83 nucleotides AO353_26610 and AO353_26615 are separated by 9 nucleotides
AO353_26600: AO353_26600 - disulfide bond formation protein DsbA, at 5,824,371 to 5,825,522
_26600
AO353_26605: AO353_26605 - MFS transporter, at 5,825,519 to 5,827,186
_26605
AO353_26610: AO353_26610 - hypothetical protein, at 5,827,270 to 5,828,070
_26610
AO353_26615: AO353_26615 - pyridine nucleotide-disulfide oxidoreductase, at 5,828,080 to 5,829,324
_26615
Position (kb) 5825
5826
5827
5828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5824.574 kb on + strand, within AO353_26600 at 5824.574 kb on + strand, within AO353_26600 at 5824.574 kb on + strand, within AO353_26600 at 5824.574 kb on + strand, within AO353_26600 at 5824.574 kb on + strand, within AO353_26600 at 5824.575 kb on - strand, within AO353_26600 at 5824.575 kb on - strand, within AO353_26600 at 5824.575 kb on - strand, within AO353_26600 at 5824.575 kb on - strand, within AO353_26600 at 5824.575 kb on - strand, within AO353_26600 at 5824.628 kb on + strand, within AO353_26600 at 5824.629 kb on - strand, within AO353_26600 at 5824.735 kb on + strand, within AO353_26600 at 5824.736 kb on - strand, within AO353_26600 at 5825.016 kb on - strand, within AO353_26600 at 5825.182 kb on + strand, within AO353_26600 at 5825.182 kb on + strand, within AO353_26600 at 5825.182 kb on + strand, within AO353_26600 at 5825.182 kb on + strand, within AO353_26600 at 5825.183 kb on - strand, within AO353_26600 at 5825.183 kb on - strand, within AO353_26600 at 5825.260 kb on + strand, within AO353_26600 at 5825.289 kb on + strand, within AO353_26600 at 5825.290 kb on - strand, within AO353_26600 at 5825.359 kb on + strand, within AO353_26600 at 5825.359 kb on + strand, within AO353_26600 at 5825.359 kb on + strand, within AO353_26600 at 5825.359 kb on + strand, within AO353_26600 at 5825.359 kb on + strand, within AO353_26600 at 5825.359 kb on + strand, within AO353_26600 at 5825.359 kb on + strand, within AO353_26600 at 5825.360 kb on - strand, within AO353_26600 at 5825.360 kb on - strand, within AO353_26600 at 5825.360 kb on - strand, within AO353_26600 at 5825.360 kb on - strand, within AO353_26600 at 5825.360 kb on - strand, within AO353_26600 at 5825.360 kb on - strand, within AO353_26600 at 5825.360 kb on - strand, within AO353_26600 at 5825.360 kb on - strand, within AO353_26600 at 5825.360 kb on - strand, within AO353_26600 at 5825.360 kb on - strand, within AO353_26600 at 5825.414 kb on + strand at 5825.414 kb on + strand at 5825.673 kb on + strand at 5825.674 kb on - strand at 5825.674 kb on - strand at 5825.762 kb on + strand, within AO353_26605 at 5825.762 kb on + strand, within AO353_26605 at 5825.762 kb on + strand, within AO353_26605 at 5825.763 kb on - strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.766 kb on + strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5825.767 kb on - strand, within AO353_26605 at 5826.023 kb on + strand, within AO353_26605 at 5826.023 kb on + strand, within AO353_26605 at 5826.023 kb on + strand, within AO353_26605 at 5826.024 kb on - strand, within AO353_26605 at 5826.039 kb on + strand, within AO353_26605 at 5826.039 kb on + strand at 5826.040 kb on - strand, within AO353_26605 at 5826.201 kb on + strand, within AO353_26605 at 5826.201 kb on + strand, within AO353_26605 at 5826.202 kb on - strand, within AO353_26605 at 5826.202 kb on - strand, within AO353_26605 at 5826.283 kb on + strand, within AO353_26605 at 5826.367 kb on + strand, within AO353_26605 at 5826.368 kb on - strand, within AO353_26605 at 5826.619 kb on - strand, within AO353_26605 at 5826.619 kb on - strand, within AO353_26605 at 5826.619 kb on - strand, within AO353_26605 at 5826.619 kb on - strand, within AO353_26605 at 5826.694 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.753 kb on + strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.754 kb on - strand, within AO353_26605 at 5826.756 kb on + strand, within AO353_26605 at 5826.756 kb on + strand, within AO353_26605 at 5826.756 kb on + strand, within AO353_26605 at 5826.756 kb on + strand, within AO353_26605 at 5826.756 kb on + strand, within AO353_26605 at 5826.757 kb on - strand, within AO353_26605 at 5826.757 kb on - strand, within AO353_26605 at 5826.757 kb on - strand, within AO353_26605 at 5826.790 kb on + strand, within AO353_26605 at 5826.791 kb on - strand, within AO353_26605 at 5826.864 kb on + strand, within AO353_26605 at 5826.864 kb on + strand, within AO353_26605 at 5826.864 kb on + strand, within AO353_26605 at 5826.864 kb on + strand, within AO353_26605 at 5826.864 kb on + strand, within AO353_26605 at 5826.864 kb on + strand, within AO353_26605 at 5826.864 kb on + strand, within AO353_26605 at 5826.864 kb on + strand, within AO353_26605 at 5826.864 kb on + strand, within AO353_26605 at 5826.864 kb on + strand at 5826.864 kb on + strand, within AO353_26605 at 5826.864 kb on + strand, within AO353_26605 at 5826.865 kb on - strand, within AO353_26605 at 5826.865 kb on - strand, within AO353_26605 at 5826.865 kb on - strand, within AO353_26605 at 5826.865 kb on - strand, within AO353_26605 at 5826.865 kb on - strand, within AO353_26605 at 5826.865 kb on - strand, within AO353_26605 at 5826.865 kb on - strand, within AO353_26605 at 5826.865 kb on - strand, within AO353_26605 at 5826.865 kb on - strand, within AO353_26605 at 5826.865 kb on - strand, within AO353_26605 at 5826.878 kb on + strand, within AO353_26605 at 5826.878 kb on + strand, within AO353_26605 at 5826.878 kb on + strand, within AO353_26605 at 5826.878 kb on + strand, within AO353_26605 at 5826.878 kb on + strand, within AO353_26605 at 5826.878 kb on + strand, within AO353_26605 at 5826.879 kb on - strand, within AO353_26605 at 5826.957 kb on + strand, within AO353_26605 at 5826.957 kb on + strand, within AO353_26605 at 5826.957 kb on + strand, within AO353_26605 at 5826.958 kb on - strand, within AO353_26605 at 5826.958 kb on - strand, within AO353_26605 at 5826.958 kb on - strand, within AO353_26605 at 5826.958 kb on - strand, within AO353_26605 at 5826.958 kb on - strand, within AO353_26605 at 5827.014 kb on + strand, within AO353_26605 at 5827.014 kb on + strand, within AO353_26605 at 5827.086 kb on + strand at 5827.087 kb on - strand at 5827.087 kb on - strand at 5827.112 kb on + strand at 5827.112 kb on + strand at 5827.113 kb on - strand at 5827.113 kb on - strand at 5827.218 kb on + strand at 5827.219 kb on - strand at 5827.289 kb on + strand at 5827.289 kb on + strand at 5827.289 kb on + strand at 5827.398 kb on + strand, within AO353_26610 at 5827.398 kb on + strand, within AO353_26610 at 5827.513 kb on + strand, within AO353_26610 at 5827.513 kb on + strand, within AO353_26610 at 5827.513 kb on + strand, within AO353_26610 at 5827.513 kb on + strand, within AO353_26610 at 5827.514 kb on - strand, within AO353_26610 at 5827.514 kb on - strand, within AO353_26610 at 5827.514 kb on - strand, within AO353_26610 at 5827.514 kb on - strand, within AO353_26610 at 5827.514 kb on - strand, within AO353_26610 at 5827.514 kb on - strand, within AO353_26610 at 5827.811 kb on + strand, within AO353_26610 at 5827.811 kb on + strand, within AO353_26610 at 5827.811 kb on + strand, within AO353_26610 at 5827.812 kb on - strand, within AO353_26610 at 5827.812 kb on - strand, within AO353_26610 at 5827.812 kb on - strand, within AO353_26610 at 5827.812 kb on - strand, within AO353_26610 at 5827.812 kb on - strand, within AO353_26610 at 5827.812 kb on - strand, within AO353_26610 at 5827.812 kb on - strand, within AO353_26610 at 5827.812 kb on - strand, within AO353_26610 at 5827.812 kb on - strand, within AO353_26610 at 5828.071 kb on - strand at 5828.071 kb on - strand at 5828.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 5,824,574 + AO353_26600 0.18 -0.3 5,824,574 + AO353_26600 0.18 -2.7 5,824,574 + AO353_26600 0.18 +1.8 5,824,574 + AO353_26600 0.18 +0.7 5,824,574 + AO353_26600 0.18 -2.2 5,824,575 - AO353_26600 0.18 +0.2 5,824,575 - AO353_26600 0.18 +1.0 5,824,575 - AO353_26600 0.18 +0.6 5,824,575 - AO353_26600 0.18 -0.6 5,824,575 - AO353_26600 0.18 +1.6 5,824,628 + AO353_26600 0.22 -0.2 5,824,629 - AO353_26600 0.22 -1.4 5,824,735 + AO353_26600 0.32 -1.6 5,824,736 - AO353_26600 0.32 -1.8 5,825,016 - AO353_26600 0.56 +1.8 5,825,182 + AO353_26600 0.70 +0.5 5,825,182 + AO353_26600 0.70 -1.2 5,825,182 + AO353_26600 0.70 +1.7 5,825,182 + AO353_26600 0.70 +0.3 5,825,183 - AO353_26600 0.70 -2.9 5,825,183 - AO353_26600 0.70 +1.1 5,825,260 + AO353_26600 0.77 -2.0 5,825,289 + AO353_26600 0.80 -2.5 5,825,290 - AO353_26600 0.80 +0.2 5,825,359 + AO353_26600 0.86 +0.5 5,825,359 + AO353_26600 0.86 +1.2 5,825,359 + AO353_26600 0.86 +0.4 5,825,359 + AO353_26600 0.86 +0.0 5,825,359 + AO353_26600 0.86 -3.3 5,825,359 + AO353_26600 0.86 -0.5 5,825,359 + AO353_26600 0.86 -3.4 5,825,360 - AO353_26600 0.86 -0.7 5,825,360 - AO353_26600 0.86 -2.0 5,825,360 - AO353_26600 0.86 -3.0 5,825,360 - AO353_26600 0.86 +1.2 5,825,360 - AO353_26600 0.86 +2.0 5,825,360 - AO353_26600 0.86 -0.9 5,825,360 - AO353_26600 0.86 +1.2 5,825,360 - AO353_26600 0.86 -0.4 5,825,360 - AO353_26600 0.86 +0.9 5,825,360 - AO353_26600 0.86 -0.0 5,825,414 + +1.9 5,825,414 + -1.2 5,825,673 + -2.6 5,825,674 - -0.0 5,825,674 - -1.4 5,825,762 + AO353_26605 0.15 -0.6 5,825,762 + AO353_26605 0.15 -2.8 5,825,762 + AO353_26605 0.15 -2.2 5,825,763 - AO353_26605 0.15 -1.7 5,825,766 + AO353_26605 0.15 +0.7 5,825,766 + AO353_26605 0.15 -1.8 5,825,766 + AO353_26605 0.15 +0.9 5,825,766 + AO353_26605 0.15 +1.3 5,825,766 + AO353_26605 0.15 +0.2 5,825,766 + AO353_26605 0.15 -0.6 5,825,766 + AO353_26605 0.15 -1.5 5,825,766 + AO353_26605 0.15 -0.7 5,825,766 + AO353_26605 0.15 -1.9 5,825,766 + AO353_26605 0.15 +0.5 5,825,766 + AO353_26605 0.15 +1.2 5,825,767 - AO353_26605 0.15 -1.7 5,825,767 - AO353_26605 0.15 -0.1 5,825,767 - AO353_26605 0.15 +1.0 5,825,767 - AO353_26605 0.15 +2.2 5,825,767 - AO353_26605 0.15 +0.7 5,825,767 - AO353_26605 0.15 +2.2 5,825,767 - AO353_26605 0.15 -0.7 5,825,767 - AO353_26605 0.15 +0.3 5,825,767 - AO353_26605 0.15 -0.9 5,825,767 - AO353_26605 0.15 -0.1 5,825,767 - AO353_26605 0.15 -2.4 5,825,767 - AO353_26605 0.15 -2.0 5,825,767 - AO353_26605 0.15 +0.5 5,826,023 + AO353_26605 0.30 -0.7 5,826,023 + AO353_26605 0.30 +0.1 5,826,023 + AO353_26605 0.30 +0.3 5,826,024 - AO353_26605 0.30 -1.5 5,826,039 + AO353_26605 0.31 +1.0 5,826,039 + -0.7 5,826,040 - AO353_26605 0.31 +1.8 5,826,201 + AO353_26605 0.41 +0.6 5,826,201 + AO353_26605 0.41 -3.2 5,826,202 - AO353_26605 0.41 +0.6 5,826,202 - AO353_26605 0.41 +0.7 5,826,283 + AO353_26605 0.46 -2.0 5,826,367 + AO353_26605 0.51 -2.1 5,826,368 - AO353_26605 0.51 -3.2 5,826,619 - AO353_26605 0.66 -0.6 5,826,619 - AO353_26605 0.66 +0.3 5,826,619 - AO353_26605 0.66 +0.5 5,826,619 - AO353_26605 0.66 -0.9 5,826,694 + AO353_26605 0.70 -0.2 5,826,753 + AO353_26605 0.74 +1.3 5,826,753 + AO353_26605 0.74 -0.2 5,826,753 + AO353_26605 0.74 +0.3 5,826,753 + AO353_26605 0.74 -0.8 5,826,753 + AO353_26605 0.74 +0.6 5,826,753 + AO353_26605 0.74 +2.1 5,826,753 + +1.9 5,826,753 + AO353_26605 0.74 -1.2 5,826,753 + AO353_26605 0.74 +0.6 5,826,753 + AO353_26605 0.74 -0.1 5,826,753 + AO353_26605 0.74 +1.0 5,826,753 + AO353_26605 0.74 -3.1 5,826,753 + AO353_26605 0.74 -2.1 5,826,753 + AO353_26605 0.74 +2.2 5,826,753 + AO353_26605 0.74 +2.8 5,826,753 + AO353_26605 0.74 +0.1 5,826,753 + AO353_26605 0.74 +2.5 5,826,753 + AO353_26605 0.74 -0.6 5,826,753 + AO353_26605 0.74 -1.1 5,826,753 + AO353_26605 0.74 +0.2 5,826,753 + AO353_26605 0.74 +1.1 5,826,753 + AO353_26605 0.74 -2.1 5,826,754 - AO353_26605 0.74 -2.1 5,826,754 - AO353_26605 0.74 +1.4 5,826,754 - AO353_26605 0.74 -1.0 5,826,754 - AO353_26605 0.74 -2.2 5,826,754 - AO353_26605 0.74 -0.0 5,826,754 - AO353_26605 0.74 +0.8 5,826,754 - AO353_26605 0.74 -0.2 5,826,754 - AO353_26605 0.74 +1.9 5,826,754 - AO353_26605 0.74 -2.5 5,826,754 - AO353_26605 0.74 -1.8 5,826,754 - AO353_26605 0.74 +1.6 5,826,754 - AO353_26605 0.74 -2.1 5,826,754 - AO353_26605 0.74 -2.0 5,826,754 - AO353_26605 0.74 -1.2 5,826,756 + AO353_26605 0.74 -2.6 5,826,756 + AO353_26605 0.74 +0.7 5,826,756 + AO353_26605 0.74 -1.8 5,826,756 + AO353_26605 0.74 -2.0 5,826,756 + AO353_26605 0.74 +0.6 5,826,757 - AO353_26605 0.74 +0.2 5,826,757 - AO353_26605 0.74 -1.6 5,826,757 - AO353_26605 0.74 -0.7 5,826,790 + AO353_26605 0.76 +2.0 5,826,791 - AO353_26605 0.76 -1.0 5,826,864 + AO353_26605 0.81 -0.2 5,826,864 + AO353_26605 0.81 -0.8 5,826,864 + AO353_26605 0.81 -2.0 5,826,864 + AO353_26605 0.81 +1.7 5,826,864 + AO353_26605 0.81 -1.0 5,826,864 + AO353_26605 0.81 -1.8 5,826,864 + AO353_26605 0.81 -2.1 5,826,864 + AO353_26605 0.81 +0.2 5,826,864 + AO353_26605 0.81 -2.1 5,826,864 + -0.7 5,826,864 + AO353_26605 0.81 -1.8 5,826,864 + AO353_26605 0.81 +1.7 5,826,865 - AO353_26605 0.81 -1.7 5,826,865 - AO353_26605 0.81 +0.5 5,826,865 - AO353_26605 0.81 +0.9 5,826,865 - AO353_26605 0.81 +0.4 5,826,865 - AO353_26605 0.81 -1.8 5,826,865 - AO353_26605 0.81 -0.8 5,826,865 - AO353_26605 0.81 +1.5 5,826,865 - AO353_26605 0.81 -1.8 5,826,865 - AO353_26605 0.81 +1.5 5,826,865 - AO353_26605 0.81 -0.1 5,826,878 + AO353_26605 0.81 +1.2 5,826,878 + AO353_26605 0.81 -0.5 5,826,878 + AO353_26605 0.81 -3.4 5,826,878 + AO353_26605 0.81 +1.0 5,826,878 + AO353_26605 0.81 +1.2 5,826,878 + AO353_26605 0.81 +0.5 5,826,879 - AO353_26605 0.82 +0.3 5,826,957 + AO353_26605 0.86 +2.3 5,826,957 + AO353_26605 0.86 -0.8 5,826,957 + AO353_26605 0.86 -0.4 5,826,958 - AO353_26605 0.86 +0.5 5,826,958 - AO353_26605 0.86 -0.1 5,826,958 - AO353_26605 0.86 +1.2 5,826,958 - AO353_26605 0.86 +0.5 5,826,958 - AO353_26605 0.86 -0.9 5,827,014 + AO353_26605 0.90 -0.2 5,827,014 + AO353_26605 0.90 +0.0 5,827,086 + +0.5 5,827,087 - -0.7 5,827,087 - +2.2 5,827,112 + +0.0 5,827,112 + +2.5 5,827,113 - +0.1 5,827,113 - -2.2 5,827,218 + -0.5 5,827,219 - -2.0 5,827,289 + +1.3 5,827,289 + -1.2 5,827,289 + -0.1 5,827,398 + AO353_26610 0.16 -1.5 5,827,398 + AO353_26610 0.16 +2.6 5,827,513 + AO353_26610 0.30 -1.7 5,827,513 + AO353_26610 0.30 +2.0 5,827,513 + AO353_26610 0.30 -1.2 5,827,513 + AO353_26610 0.30 -0.4 5,827,514 - AO353_26610 0.30 +0.8 5,827,514 - AO353_26610 0.30 +0.2 5,827,514 - AO353_26610 0.30 +0.6 5,827,514 - AO353_26610 0.30 +0.3 5,827,514 - AO353_26610 0.30 -2.8 5,827,514 - AO353_26610 0.30 -0.3 5,827,811 + AO353_26610 0.68 +0.2 5,827,811 + AO353_26610 0.68 -0.5 5,827,811 + AO353_26610 0.68 -1.2 5,827,812 - AO353_26610 0.68 +1.0 5,827,812 - AO353_26610 0.68 -1.8 5,827,812 - AO353_26610 0.68 +1.3 5,827,812 - AO353_26610 0.68 -2.9 5,827,812 - AO353_26610 0.68 +1.6 5,827,812 - AO353_26610 0.68 +0.2 5,827,812 - AO353_26610 0.68 +1.1 5,827,812 - AO353_26610 0.68 -0.5 5,827,812 - AO353_26610 0.68 +2.0 5,828,071 - +1.9 5,828,071 - +0.5 5,828,071 - -2.2
Or see this region's nucleotide sequence