Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24990 and AO353_24995 are separated by 6 nucleotides AO353_24995 and AO353_25000 are separated by 59 nucleotides AO353_25000 and AO353_25005 are separated by 818 nucleotides
AO353_24990: AO353_24990 - translation elongation factor, at 5,512,014 to 5,513,933
_24990
AO353_24995: AO353_24995 - tRNA-Sec, at 5,513,940 to 5,514,035
_24995
AO353_25000: AO353_25000 - magnesium transporter, at 5,514,095 to 5,515,108
_25000
AO353_25005: AO353_25005 - hypothetical protein, at 5,515,927 to 5,516,925
_25005
Position (kb) 5514
5515
5516 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5513.164 kb on + strand, within AO353_24990 at 5513.164 kb on + strand, within AO353_24990 at 5513.165 kb on - strand, within AO353_24990 at 5513.187 kb on - strand, within AO353_24990 at 5513.509 kb on + strand, within AO353_24990 at 5513.677 kb on + strand, within AO353_24990 at 5513.713 kb on - strand, within AO353_24990 at 5513.745 kb on - strand at 5513.745 kb on - strand at 5513.837 kb on - strand at 5513.837 kb on - strand at 5514.138 kb on + strand at 5514.138 kb on + strand at 5514.138 kb on + strand at 5514.138 kb on + strand at 5514.139 kb on - strand at 5514.139 kb on - strand at 5514.543 kb on - strand, within AO353_25000 at 5514.543 kb on - strand, within AO353_25000 at 5514.564 kb on + strand, within AO353_25000 at 5514.564 kb on + strand, within AO353_25000 at 5514.564 kb on + strand, within AO353_25000 at 5514.565 kb on - strand, within AO353_25000 at 5514.639 kb on + strand, within AO353_25000 at 5514.727 kb on - strand, within AO353_25000 at 5514.727 kb on - strand, within AO353_25000 at 5514.727 kb on - strand, within AO353_25000 at 5514.958 kb on + strand, within AO353_25000 at 5514.958 kb on + strand, within AO353_25000 at 5514.959 kb on - strand, within AO353_25000 at 5514.959 kb on - strand, within AO353_25000 at 5514.959 kb on - strand, within AO353_25000 at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.047 kb on + strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.048 kb on - strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.055 kb on + strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.056 kb on - strand at 5515.121 kb on + strand at 5515.121 kb on + strand at 5515.130 kb on + strand at 5515.131 kb on - strand at 5515.222 kb on + strand at 5515.222 kb on + strand at 5515.222 kb on + strand at 5515.222 kb on + strand at 5515.222 kb on + strand at 5515.223 kb on - strand at 5515.223 kb on - strand at 5515.229 kb on + strand at 5515.270 kb on + strand at 5515.271 kb on - strand at 5515.338 kb on - strand at 5515.338 kb on - strand at 5515.360 kb on + strand at 5515.371 kb on + strand at 5515.375 kb on + strand at 5515.433 kb on + strand at 5515.434 kb on - strand at 5515.434 kb on - strand at 5515.461 kb on + strand at 5515.469 kb on - strand at 5515.607 kb on + strand at 5515.641 kb on + strand at 5515.642 kb on - strand at 5515.645 kb on + strand at 5515.645 kb on + strand at 5515.646 kb on - strand at 5515.646 kb on - strand at 5515.647 kb on + strand at 5515.647 kb on + strand at 5515.648 kb on - strand at 5515.648 kb on - strand at 5515.648 kb on - strand at 5515.648 kb on - strand at 5515.649 kb on + strand at 5515.649 kb on + strand at 5515.649 kb on + strand at 5515.649 kb on + strand at 5515.650 kb on - strand at 5515.650 kb on - strand at 5515.667 kb on + strand at 5515.667 kb on + strand at 5515.714 kb on + strand at 5515.715 kb on - strand at 5515.717 kb on + strand at 5515.717 kb on + strand at 5515.717 kb on + strand at 5515.717 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.788 kb on + strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.789 kb on - strand at 5515.821 kb on + strand at 5515.821 kb on + strand at 5515.822 kb on - strand at 5515.822 kb on - strand at 5515.822 kb on - strand at 5515.822 kb on - strand at 5515.822 kb on - strand at 5515.822 kb on - strand at 5515.849 kb on + strand at 5515.849 kb on + strand at 5515.849 kb on + strand at 5515.850 kb on - strand at 5515.850 kb on - strand at 5515.972 kb on + strand at 5515.972 kb on + strand at 5515.972 kb on + strand at 5515.972 kb on + strand at 5515.972 kb on + strand at 5515.973 kb on - strand at 5515.973 kb on - strand at 5516.070 kb on + strand, within AO353_25005 at 5516.071 kb on - strand, within AO353_25005 at 5516.100 kb on + strand, within AO353_25005 at 5516.100 kb on + strand, within AO353_25005 at 5516.101 kb on - strand, within AO353_25005
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 5,513,164 + AO353_24990 0.60 +0.9 5,513,164 + AO353_24990 0.60 +1.4 5,513,165 - AO353_24990 0.60 +0.4 5,513,187 - AO353_24990 0.61 -1.6 5,513,509 + AO353_24990 0.78 +0.2 5,513,677 + AO353_24990 0.87 +1.3 5,513,713 - AO353_24990 0.88 -1.3 5,513,745 - -0.7 5,513,745 - -0.0 5,513,837 - -1.1 5,513,837 - +1.8 5,514,138 + -0.0 5,514,138 + -3.0 5,514,138 + +0.4 5,514,138 + +1.4 5,514,139 - -0.1 5,514,139 - -0.2 5,514,543 - AO353_25000 0.44 -1.9 5,514,543 - AO353_25000 0.44 -1.5 5,514,564 + AO353_25000 0.46 -2.0 5,514,564 + AO353_25000 0.46 -0.7 5,514,564 + AO353_25000 0.46 -2.0 5,514,565 - AO353_25000 0.46 +0.3 5,514,639 + AO353_25000 0.54 +0.7 5,514,727 - AO353_25000 0.62 +0.4 5,514,727 - AO353_25000 0.62 -2.2 5,514,727 - AO353_25000 0.62 -1.6 5,514,958 + AO353_25000 0.85 +1.9 5,514,958 + AO353_25000 0.85 -0.2 5,514,959 - AO353_25000 0.85 -3.8 5,514,959 - AO353_25000 0.85 +0.6 5,514,959 - AO353_25000 0.85 +0.1 5,515,047 + -1.7 5,515,047 + +1.1 5,515,047 + -1.3 5,515,047 + -0.6 5,515,047 + -2.0 5,515,047 + -0.6 5,515,047 + +1.8 5,515,048 - -1.0 5,515,048 - +0.7 5,515,048 - -0.2 5,515,048 - +2.9 5,515,048 - +1.2 5,515,048 - -2.1 5,515,048 - -2.0 5,515,048 - +0.6 5,515,055 + -0.2 5,515,055 + -2.7 5,515,055 + +3.3 5,515,055 + +0.2 5,515,055 + -0.9 5,515,055 + -1.5 5,515,055 + -2.2 5,515,055 + -3.2 5,515,056 - -2.3 5,515,056 - +1.1 5,515,056 - +0.9 5,515,056 - +0.9 5,515,056 - +0.7 5,515,056 - +0.7 5,515,056 - -1.7 5,515,056 - +1.2 5,515,056 - +0.3 5,515,056 - -2.2 5,515,056 - -3.6 5,515,121 + -0.9 5,515,121 + -0.0 5,515,130 + +2.3 5,515,131 - -0.3 5,515,222 + +0.4 5,515,222 + -2.4 5,515,222 + -0.2 5,515,222 + -2.9 5,515,222 + -1.0 5,515,223 - -1.7 5,515,223 - -0.1 5,515,229 + +0.8 5,515,270 + -0.2 5,515,271 - +0.4 5,515,338 - -2.3 5,515,338 - +0.8 5,515,360 + +0.4 5,515,371 + +0.7 5,515,375 + +0.1 5,515,433 + +0.2 5,515,434 - +1.2 5,515,434 - +1.0 5,515,461 + +0.1 5,515,469 - -1.0 5,515,607 + -4.0 5,515,641 + +0.6 5,515,642 - +1.1 5,515,645 + -1.9 5,515,645 + -1.7 5,515,646 - +1.0 5,515,646 - +1.6 5,515,647 + +1.7 5,515,647 + -0.8 5,515,648 - +0.2 5,515,648 - +0.4 5,515,648 - +1.1 5,515,648 - +0.6 5,515,649 + -1.9 5,515,649 + -0.5 5,515,649 + -0.8 5,515,649 + -1.5 5,515,650 - -0.3 5,515,650 - +0.2 5,515,667 + -0.2 5,515,667 + -1.0 5,515,714 + -0.3 5,515,715 - +0.9 5,515,717 + -0.9 5,515,717 + +0.2 5,515,717 + -0.8 5,515,717 + -1.1 5,515,788 + -0.7 5,515,788 + +0.4 5,515,788 + -0.8 5,515,788 + -0.2 5,515,788 + -1.2 5,515,788 + -1.3 5,515,788 + +1.3 5,515,788 + +0.1 5,515,788 + -0.9 5,515,788 + +1.0 5,515,788 + +1.9 5,515,788 + +0.5 5,515,788 + -2.2 5,515,789 - -0.3 5,515,789 - -1.5 5,515,789 - +1.3 5,515,789 - -1.0 5,515,789 - +0.7 5,515,789 - +0.3 5,515,789 - -0.0 5,515,789 - -2.3 5,515,821 + +0.1 5,515,821 + -3.1 5,515,822 - +0.8 5,515,822 - +1.4 5,515,822 - +1.3 5,515,822 - +2.0 5,515,822 - +1.4 5,515,822 - -0.1 5,515,849 + -0.5 5,515,849 + +0.8 5,515,849 + +0.5 5,515,850 - +0.7 5,515,850 - -1.3 5,515,972 + -1.9 5,515,972 + -0.1 5,515,972 + -3.4 5,515,972 + +1.2 5,515,972 + -2.3 5,515,973 - -0.8 5,515,973 - +0.7 5,516,070 + AO353_25005 0.14 -1.8 5,516,071 - AO353_25005 0.14 -0.1 5,516,100 + AO353_25005 0.17 -0.0 5,516,100 + AO353_25005 0.17 +1.7 5,516,101 - AO353_25005 0.17 +1.7
Or see this region's nucleotide sequence