Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02285 and AO353_02290 are separated by 103 nucleotides AO353_02290 and AO353_02295 are separated by 194 nucleotides AO353_02295 and AO353_02300 are separated by 82 nucleotides AO353_02300 and AO353_02305 are separated by 343 nucleotides
AO353_02285: AO353_02285 - GTP cyclohydrolase, at 487,147 to 487,692
_02285
AO353_02290: AO353_02290 - glutaredoxin, at 487,796 to 488,167
_02290
AO353_02295: AO353_02295 - GntR family transcriptional regulator, at 488,362 to 489,528
_02295
AO353_02300: AO353_02300 - MarR family transcriptional regulator, at 489,611 to 490,054
_02300
AO353_02305: AO353_02305 - guanine permease, at 490,398 to 491,747
_02305
Position (kb) 488
489
490 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 487.690 kb on + strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.691 kb on - strand at 487.691 kb on - strand at 487.691 kb on - strand at 487.701 kb on - strand at 487.754 kb on + strand at 487.755 kb on - strand at 487.755 kb on - strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.793 kb on - strand at 487.793 kb on - strand at 487.793 kb on - strand at 487.800 kb on + strand at 487.800 kb on + strand at 487.801 kb on - strand at 487.801 kb on - strand at 487.801 kb on - strand at 487.804 kb on - strand at 487.804 kb on - strand at 487.932 kb on - strand, within AO353_02290 at 487.932 kb on - strand, within AO353_02290 at 488.104 kb on + strand, within AO353_02290 at 488.105 kb on - strand, within AO353_02290 at 488.105 kb on - strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.114 kb on + strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.115 kb on - strand, within AO353_02290 at 488.138 kb on + strand at 488.138 kb on + strand at 488.139 kb on - strand at 488.139 kb on - strand at 488.139 kb on - strand at 488.216 kb on + strand at 488.216 kb on + strand at 488.216 kb on + strand at 488.216 kb on + strand at 488.217 kb on - strand at 488.217 kb on - strand at 488.262 kb on + strand at 488.304 kb on + strand at 488.305 kb on - strand at 488.320 kb on + strand at 488.343 kb on - strand at 488.343 kb on - strand at 488.352 kb on + strand at 488.352 kb on + strand at 488.395 kb on + strand at 488.396 kb on - strand at 488.396 kb on - strand at 488.396 kb on - strand at 488.412 kb on + strand at 488.448 kb on + strand at 488.511 kb on + strand, within AO353_02295 at 488.511 kb on + strand, within AO353_02295 at 488.511 kb on + strand, within AO353_02295 at 488.512 kb on - strand, within AO353_02295 at 488.605 kb on + strand at 488.605 kb on + strand, within AO353_02295 at 488.605 kb on + strand, within AO353_02295 at 488.605 kb on + strand, within AO353_02295 at 488.605 kb on + strand, within AO353_02295 at 488.825 kb on + strand, within AO353_02295 at 488.873 kb on + strand, within AO353_02295 at 488.873 kb on + strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 489.021 kb on - strand, within AO353_02295 at 489.021 kb on - strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.186 kb on - strand, within AO353_02295 at 489.186 kb on - strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.228 kb on - strand, within AO353_02295 at 489.228 kb on - strand, within AO353_02295 at 489.366 kb on - strand, within AO353_02295 at 489.499 kb on - strand at 489.499 kb on - strand at 489.560 kb on + strand at 489.571 kb on - strand at 489.585 kb on - strand at 489.602 kb on + strand at 489.603 kb on - strand at 489.622 kb on + strand at 489.889 kb on + strand, within AO353_02300 at 489.889 kb on + strand, within AO353_02300 at 489.889 kb on + strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.011 kb on + strand at 490.118 kb on - strand at 490.118 kb on - strand at 490.141 kb on - strand at 490.141 kb on - strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.263 kb on - strand at 490.274 kb on + strand at 490.274 kb on + strand at 490.323 kb on + strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.374 kb on + strand at 490.374 kb on + strand at 490.375 kb on - strand at 490.375 kb on - strand at 490.375 kb on - strand at 490.390 kb on + strand at 490.390 kb on + strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.475 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.527 kb on - strand at 490.527 kb on - strand at 490.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 487,690 + +0.3 487,690 + -0.4 487,690 + +1.4 487,690 + -1.4 487,691 - +0.9 487,691 - +2.0 487,691 - +0.5 487,701 - -1.6 487,754 + +0.2 487,755 - +0.2 487,755 - -0.5 487,790 + +1.6 487,790 + +0.0 487,790 + -1.0 487,790 + -0.9 487,790 + +0.8 487,790 + +0.8 487,790 + -1.4 487,790 + -1.2 487,790 + -0.6 487,791 - -1.0 487,791 - -1.0 487,791 - -1.1 487,791 - +0.6 487,791 - +0.3 487,791 - +0.5 487,791 - +2.8 487,791 - +0.7 487,791 - +0.3 487,791 - +0.8 487,791 - +3.0 487,791 - +0.5 487,792 + +2.6 487,792 + +1.9 487,792 + -2.8 487,792 + -1.6 487,793 - -0.6 487,793 - +2.4 487,793 - -0.6 487,800 + -0.8 487,800 + -1.0 487,801 - -1.1 487,801 - +2.7 487,801 - +0.4 487,804 - +1.0 487,804 - -0.4 487,932 - AO353_02290 0.37 -0.2 487,932 - AO353_02290 0.37 +1.6 488,104 + AO353_02290 0.83 +1.3 488,105 - AO353_02290 0.83 +0.2 488,105 - AO353_02290 0.83 +0.9 488,114 + AO353_02290 0.85 -3.3 488,114 + AO353_02290 0.85 -1.5 488,114 + AO353_02290 0.85 +0.8 488,114 + AO353_02290 0.85 -3.0 488,114 + AO353_02290 0.85 -0.4 488,114 + AO353_02290 0.85 -1.4 488,114 + AO353_02290 0.85 +1.0 488,114 + AO353_02290 0.85 -0.0 488,114 + AO353_02290 0.85 +2.9 488,114 + AO353_02290 0.85 +1.4 488,114 + AO353_02290 0.85 -0.4 488,114 + AO353_02290 0.85 -0.6 488,114 + AO353_02290 0.85 +1.8 488,114 + AO353_02290 0.85 +3.1 488,115 - AO353_02290 0.86 -2.4 488,115 - AO353_02290 0.86 -3.6 488,115 - AO353_02290 0.86 -1.9 488,115 - AO353_02290 0.86 +0.4 488,115 - AO353_02290 0.86 -2.6 488,115 - AO353_02290 0.86 +0.6 488,115 - AO353_02290 0.86 +1.0 488,115 - AO353_02290 0.86 -1.2 488,115 - AO353_02290 0.86 +0.6 488,115 - AO353_02290 0.86 +1.5 488,138 + +1.0 488,138 + +1.6 488,139 - +1.3 488,139 - +0.7 488,139 - +0.1 488,216 + +0.3 488,216 + +1.0 488,216 + +0.1 488,216 + -0.8 488,217 - -1.2 488,217 - +1.2 488,262 + +0.8 488,304 + -2.0 488,305 - +1.2 488,320 + -0.6 488,343 - +2.2 488,343 - +0.4 488,352 + -0.2 488,352 + -0.9 488,395 + +0.3 488,396 - -0.9 488,396 - -1.2 488,396 - +0.9 488,412 + -0.3 488,448 + +0.9 488,511 + AO353_02295 0.13 -0.7 488,511 + AO353_02295 0.13 +1.0 488,511 + AO353_02295 0.13 +0.4 488,512 - AO353_02295 0.13 -1.0 488,605 + +0.2 488,605 + AO353_02295 0.21 +1.6 488,605 + AO353_02295 0.21 +0.0 488,605 + AO353_02295 0.21 -1.0 488,605 + AO353_02295 0.21 +1.0 488,825 + AO353_02295 0.40 +1.0 488,873 + AO353_02295 0.44 +2.3 488,873 + AO353_02295 0.44 +0.9 488,874 - AO353_02295 0.44 +0.9 488,874 - AO353_02295 0.44 -2.8 488,874 - AO353_02295 0.44 +0.3 488,874 - AO353_02295 0.44 +1.2 489,021 - AO353_02295 0.56 -2.0 489,021 - AO353_02295 0.56 -1.7 489,059 + AO353_02295 0.60 +0.2 489,059 + AO353_02295 0.60 +0.3 489,059 + AO353_02295 0.60 -0.9 489,059 + AO353_02295 0.60 -0.6 489,060 - AO353_02295 0.60 -1.9 489,060 - AO353_02295 0.60 +1.1 489,060 - AO353_02295 0.60 +1.4 489,060 - AO353_02295 0.60 -2.8 489,185 + AO353_02295 0.71 +1.1 489,185 + AO353_02295 0.71 +1.8 489,185 + AO353_02295 0.71 -2.1 489,185 + AO353_02295 0.71 +1.8 489,186 - AO353_02295 0.71 -0.1 489,186 - AO353_02295 0.71 -0.1 489,227 + AO353_02295 0.74 -0.1 489,227 + AO353_02295 0.74 -0.2 489,227 + AO353_02295 0.74 +0.2 489,227 + AO353_02295 0.74 +0.9 489,227 + AO353_02295 0.74 -1.7 489,228 - AO353_02295 0.74 +0.6 489,228 - AO353_02295 0.74 +1.9 489,366 - AO353_02295 0.86 +0.7 489,499 - +1.4 489,499 - -1.2 489,560 + -1.2 489,571 - -1.1 489,585 - +1.5 489,602 + +1.0 489,603 - -1.0 489,622 + -1.8 489,889 + AO353_02300 0.63 -2.9 489,889 + AO353_02300 0.63 -1.2 489,889 + AO353_02300 0.63 +0.8 490,000 - AO353_02300 0.88 -1.4 490,000 - AO353_02300 0.88 -1.2 490,000 - AO353_02300 0.88 -1.7 490,000 - AO353_02300 0.88 -0.8 490,011 + -2.8 490,118 - -1.6 490,118 - -2.2 490,141 - -0.9 490,141 - -1.0 490,203 + +1.8 490,203 + +0.8 490,203 + +0.2 490,203 + -0.8 490,203 + +1.4 490,204 - +0.9 490,204 - +2.5 490,204 - +1.1 490,204 - +0.2 490,204 - +0.5 490,205 + +1.9 490,205 + -0.6 490,205 + -2.6 490,205 + -2.6 490,205 + +1.0 490,205 + -2.0 490,205 + -1.0 490,205 + -0.1 490,205 + -2.0 490,205 + -1.2 490,205 + -2.6 490,205 + +0.5 490,205 + -1.0 490,206 - -0.2 490,206 - +0.4 490,206 - +0.2 490,206 - -0.3 490,206 - -1.2 490,206 - +1.9 490,206 - -2.1 490,206 - +0.3 490,206 - -2.8 490,206 - -0.0 490,206 - -2.6 490,206 - -2.0 490,206 - +1.0 490,206 - -2.0 490,263 - -3.3 490,274 + -1.7 490,274 + -2.8 490,323 + -0.2 490,324 - +3.3 490,324 - -2.8 490,324 - -0.1 490,324 - -2.4 490,324 - +1.5 490,324 - +1.0 490,368 + -2.4 490,368 + -0.8 490,368 + -1.1 490,368 + -2.6 490,369 - +2.1 490,369 - -0.8 490,369 - -0.2 490,369 - +1.1 490,369 - +0.3 490,374 + +0.7 490,374 + +2.3 490,375 - +0.2 490,375 - -1.5 490,375 - -1.4 490,390 + -1.2 490,390 + +0.3 490,391 - -1.7 490,391 - +1.8 490,391 - +0.8 490,391 - -1.2 490,391 - +0.2 490,391 - +2.2 490,475 + -0.4 490,523 + +0.4 490,523 + -0.4 490,523 + +2.0 490,523 + -0.2 490,524 - +1.0 490,524 - -0.7 490,524 - -0.6 490,524 - -0.4 490,524 - -1.7 490,524 - -1.8 490,526 + -0.6 490,526 + -2.1 490,526 + +1.6 490,526 + +1.3 490,526 + +1.2 490,526 + +1.3 490,527 - -2.3 490,527 - -2.3 490,527 - -2.4
Or see this region's nucleotide sequence