Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01925 and AO353_01930 are separated by 108 nucleotides AO353_01930 and AO353_01935 are separated by 171 nucleotides
AO353_01925: AO353_01925 - hydroxypyruvate isomerase, at 407,023 to 407,805
_01925
AO353_01930: AO353_01930 - 2-hydroxy-3-oxopropionate reductase, at 407,914 to 408,804
_01930
AO353_01935: AO353_01935 - hydroxypyruvate reductase, at 408,976 to 410,256
_01935
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 407.002 kb on + strand at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.299 kb on + strand, within AO353_01925 at 407.299 kb on + strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.405 kb on - strand, within AO353_01925 at 407.405 kb on - strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.551 kb on + strand, within AO353_01925 at 407.551 kb on + strand, within AO353_01925 at 407.552 kb on - strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.683 kb on + strand, within AO353_01925 at 407.743 kb on + strand at 407.743 kb on + strand at 407.743 kb on + strand at 407.743 kb on + strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.863 kb on + strand at 407.864 kb on - strand at 407.864 kb on - strand at 407.864 kb on - strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.870 kb on - strand at 407.891 kb on + strand at 407.891 kb on + strand at 407.892 kb on - strand at 407.892 kb on - strand at 407.892 kb on - strand at 407.892 kb on - strand at 407.893 kb on + strand at 407.893 kb on + strand at 407.893 kb on + strand at 407.894 kb on - strand at 407.894 kb on - strand at 407.894 kb on - strand at 407.894 kb on - strand at 407.894 kb on - strand at 407.894 kb on - strand at 407.919 kb on + strand at 407.920 kb on - strand at 408.259 kb on + strand, within AO353_01930 at 408.259 kb on + strand, within AO353_01930 at 408.259 kb on + strand, within AO353_01930 at 408.259 kb on + strand, within AO353_01930 at 408.260 kb on - strand, within AO353_01930 at 408.260 kb on - strand, within AO353_01930 at 408.260 kb on - strand, within AO353_01930 at 408.566 kb on + strand, within AO353_01930 at 408.566 kb on + strand, within AO353_01930 at 408.566 kb on + strand, within AO353_01930 at 408.566 kb on + strand, within AO353_01930 at 408.566 kb on + strand, within AO353_01930 at 408.567 kb on - strand, within AO353_01930 at 408.567 kb on - strand, within AO353_01930 at 408.567 kb on - strand, within AO353_01930 at 408.798 kb on + strand at 408.802 kb on + strand at 408.802 kb on + strand at 408.802 kb on + strand at 408.802 kb on + strand at 408.802 kb on + strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.803 kb on - strand at 408.812 kb on + strand at 408.822 kb on + strand at 408.822 kb on + strand at 408.823 kb on - strand at 408.823 kb on - strand at 408.837 kb on + strand at 408.838 kb on - strand at 408.920 kb on + strand at 408.920 kb on + strand at 408.929 kb on + strand at 408.929 kb on + strand at 408.930 kb on - strand at 408.930 kb on - strand at 409.064 kb on + strand at 409.064 kb on + strand at 409.485 kb on + strand, within AO353_01935 at 409.510 kb on + strand, within AO353_01935 at 409.510 kb on + strand, within AO353_01935 at 409.510 kb on + strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.511 kb on - strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.512 kb on + strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.513 kb on - strand, within AO353_01935 at 409.516 kb on + strand, within AO353_01935 at 409.516 kb on + strand, within AO353_01935 at 409.516 kb on + strand, within AO353_01935 at 409.517 kb on - strand, within AO353_01935 at 409.517 kb on - strand, within AO353_01935 at 409.517 kb on - strand, within AO353_01935 at 409.682 kb on + strand, within AO353_01935 at 409.682 kb on + strand, within AO353_01935 at 409.682 kb on + strand, within AO353_01935 at 409.682 kb on + strand, within AO353_01935 at 409.683 kb on - strand, within AO353_01935 at 409.683 kb on - strand, within AO353_01935
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 407,002 + -2.3 407,122 + AO353_01925 0.13 +2.0 407,122 + AO353_01925 0.13 +0.6 407,122 + AO353_01925 0.13 +0.1 407,122 + AO353_01925 0.13 -1.5 407,122 + AO353_01925 0.13 -3.1 407,123 - AO353_01925 0.13 +1.9 407,123 - AO353_01925 0.13 +0.0 407,123 - AO353_01925 0.13 +2.7 407,299 + AO353_01925 0.35 -1.6 407,299 + AO353_01925 0.35 -0.2 407,300 - AO353_01925 0.35 -1.6 407,300 - AO353_01925 0.35 -0.6 407,300 - AO353_01925 0.35 +2.9 407,300 - AO353_01925 0.35 +1.1 407,404 + AO353_01925 0.49 +0.0 407,404 + AO353_01925 0.49 +1.1 407,404 + AO353_01925 0.49 -0.6 407,404 + AO353_01925 0.49 -1.1 407,404 + AO353_01925 0.49 -0.2 407,404 + AO353_01925 0.49 +1.3 407,404 + AO353_01925 0.49 -0.6 407,405 - AO353_01925 0.49 +0.2 407,405 - AO353_01925 0.49 +2.4 407,482 + AO353_01925 0.59 -2.6 407,482 + AO353_01925 0.59 +2.6 407,482 + AO353_01925 0.59 -0.7 407,482 + AO353_01925 0.59 +0.1 407,482 + AO353_01925 0.59 +0.5 407,482 + AO353_01925 0.59 -1.5 407,483 - AO353_01925 0.59 -1.1 407,483 - AO353_01925 0.59 -2.4 407,483 - AO353_01925 0.59 -2.5 407,483 - AO353_01925 0.59 +0.9 407,551 + AO353_01925 0.67 +0.3 407,551 + AO353_01925 0.67 -1.3 407,552 - AO353_01925 0.68 +0.5 407,560 + AO353_01925 0.69 -1.0 407,560 + AO353_01925 0.69 -1.0 407,560 + AO353_01925 0.69 -1.5 407,560 + AO353_01925 0.69 -1.7 407,560 + AO353_01925 0.69 -0.2 407,560 + AO353_01925 0.69 +0.9 407,560 + AO353_01925 0.69 -1.6 407,560 + AO353_01925 0.69 -0.6 407,560 + AO353_01925 0.69 +0.4 407,560 + AO353_01925 0.69 +0.3 407,560 + AO353_01925 0.69 +1.5 407,561 - AO353_01925 0.69 -0.7 407,561 - AO353_01925 0.69 -0.7 407,561 - AO353_01925 0.69 +0.0 407,561 - AO353_01925 0.69 -1.7 407,561 - AO353_01925 0.69 +0.1 407,561 - AO353_01925 0.69 +1.7 407,561 - AO353_01925 0.69 -2.2 407,561 - AO353_01925 0.69 +1.5 407,561 - AO353_01925 0.69 -1.3 407,561 - AO353_01925 0.69 +0.1 407,561 - AO353_01925 0.69 +1.4 407,683 + AO353_01925 0.84 -0.2 407,743 + +1.0 407,743 + -0.4 407,743 + +1.3 407,743 + -2.5 407,744 - +0.7 407,744 - -0.3 407,744 - +1.6 407,744 - +0.7 407,744 - +1.1 407,744 - -1.1 407,744 - +0.9 407,744 - +0.4 407,744 - -0.1 407,863 + +0.2 407,864 - +0.6 407,864 - +1.8 407,864 - +0.7 407,869 + -0.7 407,869 + -0.1 407,869 + -2.0 407,869 + +0.1 407,869 + -1.9 407,869 + -1.4 407,869 + -0.4 407,870 - -1.1 407,891 + +2.5 407,891 + -2.2 407,892 - -2.0 407,892 - +0.4 407,892 - +3.1 407,892 - +1.0 407,893 + -1.0 407,893 + +0.5 407,893 + +2.5 407,894 - +0.9 407,894 - -0.5 407,894 - -2.6 407,894 - +2.8 407,894 - +0.9 407,894 - +1.0 407,919 + +0.2 407,920 - +0.8 408,259 + AO353_01930 0.39 +1.9 408,259 + AO353_01930 0.39 -1.3 408,259 + AO353_01930 0.39 +0.1 408,259 + AO353_01930 0.39 -1.4 408,260 - AO353_01930 0.39 -0.1 408,260 - AO353_01930 0.39 +1.0 408,260 - AO353_01930 0.39 +0.5 408,566 + AO353_01930 0.73 -0.8 408,566 + AO353_01930 0.73 -1.9 408,566 + AO353_01930 0.73 -0.5 408,566 + AO353_01930 0.73 -1.0 408,566 + AO353_01930 0.73 -0.3 408,567 - AO353_01930 0.73 -0.7 408,567 - AO353_01930 0.73 +1.4 408,567 - AO353_01930 0.73 -0.3 408,798 + +0.1 408,802 + +0.3 408,802 + +1.1 408,802 + +1.2 408,802 + +1.6 408,802 + -1.6 408,803 - +0.6 408,803 - -1.3 408,803 - +0.9 408,803 - -0.4 408,803 - -0.3 408,803 - +0.6 408,803 - +2.5 408,803 - -3.5 408,803 - +0.1 408,803 - +0.5 408,803 - -0.7 408,803 - -0.2 408,803 - +0.5 408,812 + -0.9 408,822 + -1.0 408,822 + -1.1 408,823 - -0.7 408,823 - +0.8 408,837 + -1.7 408,838 - +2.3 408,920 + -3.4 408,920 + +1.1 408,929 + +0.1 408,929 + +1.0 408,930 - +0.1 408,930 - -0.9 409,064 + +1.5 409,064 + +2.6 409,485 + AO353_01935 0.40 +0.8 409,510 + AO353_01935 0.42 -2.1 409,510 + AO353_01935 0.42 +0.9 409,510 + AO353_01935 0.42 +1.1 409,511 - AO353_01935 0.42 -2.3 409,511 - AO353_01935 0.42 +1.0 409,511 - AO353_01935 0.42 -2.5 409,511 - AO353_01935 0.42 +1.5 409,511 - AO353_01935 0.42 -1.3 409,511 - AO353_01935 0.42 +0.6 409,512 + AO353_01935 0.42 -2.1 409,512 + AO353_01935 0.42 +1.5 409,512 + AO353_01935 0.42 +0.4 409,512 + AO353_01935 0.42 +0.8 409,512 + AO353_01935 0.42 +0.8 409,512 + AO353_01935 0.42 +0.4 409,512 + AO353_01935 0.42 +1.5 409,512 + AO353_01935 0.42 +1.0 409,512 + AO353_01935 0.42 +2.1 409,512 + AO353_01935 0.42 +1.9 409,512 + AO353_01935 0.42 -3.0 409,513 - AO353_01935 0.42 +2.2 409,513 - AO353_01935 0.42 -0.7 409,513 - AO353_01935 0.42 +1.7 409,513 - AO353_01935 0.42 -0.6 409,513 - AO353_01935 0.42 +0.7 409,513 - AO353_01935 0.42 -1.5 409,513 - AO353_01935 0.42 -1.1 409,513 - AO353_01935 0.42 +0.4 409,513 - AO353_01935 0.42 -2.0 409,513 - AO353_01935 0.42 +2.7 409,516 + AO353_01935 0.42 -2.1 409,516 + AO353_01935 0.42 -0.7 409,516 + AO353_01935 0.42 -0.7 409,517 - AO353_01935 0.42 -0.1 409,517 - AO353_01935 0.42 +0.8 409,517 - AO353_01935 0.42 -1.4 409,682 + AO353_01935 0.55 +0.9 409,682 + AO353_01935 0.55 +1.1 409,682 + AO353_01935 0.55 +1.5 409,682 + AO353_01935 0.55 +0.2 409,683 - AO353_01935 0.55 -0.6 409,683 - AO353_01935 0.55 +2.6
Or see this region's nucleotide sequence