Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00250 and AO353_00255 are separated by 29 nucleotides AO353_00255 and AO353_00260 overlap by 4 nucleotides AO353_00260 and AO353_00265 are separated by 72 nucleotides AO353_00265 and AO353_00270 are separated by 2 nucleotides
AO353_00250: AO353_00250 - hypothetical protein, at 45,630 to 45,830
_00250
AO353_00255: AO353_00255 - hypothetical protein, at 45,860 to 46,339
_00255
AO353_00260: AO353_00260 - hypothetical protein, at 46,336 to 46,701
_00260
AO353_00265: AO353_00265 - hypothetical protein, at 46,774 to 47,007
_00265
AO353_00270: AO353_00270 - toprim domain protein, at 47,010 to 49,703
_00270
Position (kb) 46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 45.854 kb on + strand at 45.854 kb on + strand at 45.854 kb on + strand at 45.854 kb on + strand at 45.854 kb on + strand at 45.854 kb on + strand at 45.854 kb on + strand at 45.855 kb on - strand at 45.855 kb on - strand at 45.855 kb on - strand at 45.855 kb on - strand at 45.855 kb on - strand at 45.855 kb on - strand at 45.855 kb on - strand at 45.855 kb on - strand at 45.855 kb on - strand at 45.855 kb on - strand at 45.876 kb on + strand at 45.876 kb on + strand at 45.987 kb on - strand at 46.071 kb on - strand, within AO353_00255 at 46.071 kb on - strand, within AO353_00255 at 46.071 kb on - strand, within AO353_00255 at 46.071 kb on - strand, within AO353_00255 at 46.071 kb on - strand, within AO353_00255 at 46.071 kb on - strand, within AO353_00255 at 46.071 kb on - strand, within AO353_00255 at 46.075 kb on - strand, within AO353_00255 at 46.075 kb on - strand, within AO353_00255 at 46.086 kb on - strand, within AO353_00255 at 46.086 kb on - strand, within AO353_00255 at 46.102 kb on - strand, within AO353_00255 at 46.355 kb on + strand at 46.363 kb on + strand at 46.364 kb on - strand at 46.364 kb on - strand at 46.439 kb on + strand, within AO353_00260 at 46.439 kb on + strand, within AO353_00260 at 46.440 kb on - strand, within AO353_00260 at 46.477 kb on + strand, within AO353_00260 at 46.603 kb on - strand, within AO353_00260 at 46.603 kb on - strand, within AO353_00260 at 46.646 kb on - strand, within AO353_00260 at 46.646 kb on - strand, within AO353_00260 at 46.700 kb on - strand at 46.714 kb on - strand at 46.714 kb on - strand at 46.714 kb on - strand at 46.714 kb on - strand at 46.714 kb on - strand at 46.880 kb on - strand, within AO353_00265 at 46.968 kb on - strand, within AO353_00265 at 46.968 kb on - strand, within AO353_00265 at 46.968 kb on - strand, within AO353_00265 at 46.968 kb on - strand, within AO353_00265 at 47.005 kb on + strand at 47.035 kb on + strand at 47.035 kb on + strand at 47.035 kb on + strand at 47.035 kb on + strand at 47.035 kb on + strand at 47.035 kb on + strand at 47.035 kb on + strand at 47.036 kb on - strand at 47.036 kb on - strand at 47.036 kb on - strand at 47.036 kb on - strand at 47.036 kb on - strand at 47.036 kb on - strand at 47.038 kb on + strand at 47.038 kb on + strand at 47.038 kb on + strand at 47.039 kb on - strand at 47.039 kb on - strand at 47.039 kb on - strand at 47.088 kb on + strand at 47.088 kb on + strand at 47.088 kb on + strand at 47.088 kb on + strand at 47.088 kb on + strand at 47.088 kb on + strand at 47.088 kb on + strand at 47.088 kb on + strand at 47.088 kb on + strand at 47.089 kb on - strand at 47.089 kb on - strand at 47.089 kb on - strand at 47.089 kb on - strand at 47.089 kb on - strand at 47.133 kb on + strand at 47.133 kb on + strand at 47.133 kb on + strand at 47.133 kb on + strand at 47.133 kb on + strand at 47.134 kb on - strand at 47.134 kb on - strand at 47.134 kb on - strand at 47.134 kb on - strand at 47.134 kb on - strand at 47.192 kb on + strand at 47.193 kb on - strand at 47.204 kb on - strand at 47.204 kb on - strand at 47.214 kb on + strand at 47.214 kb on + strand at 47.215 kb on - strand at 47.215 kb on - strand at 47.215 kb on - strand at 47.215 kb on - strand at 47.289 kb on + strand, within AO353_00270 at 47.290 kb on - strand, within AO353_00270 at 47.290 kb on - strand, within AO353_00270 at 47.290 kb on - strand, within AO353_00270 at 47.316 kb on - strand, within AO353_00270 at 47.316 kb on - strand, within AO353_00270 at 47.316 kb on - strand, within AO353_00270 at 47.339 kb on + strand, within AO353_00270 at 47.340 kb on - strand, within AO353_00270 at 47.340 kb on - strand, within AO353_00270 at 47.352 kb on + strand, within AO353_00270 at 47.352 kb on + strand, within AO353_00270 at 47.353 kb on - strand, within AO353_00270 at 47.353 kb on - strand, within AO353_00270 at 47.355 kb on + strand, within AO353_00270 at 47.355 kb on + strand, within AO353_00270 at 47.356 kb on - strand, within AO353_00270 at 47.356 kb on - strand, within AO353_00270 at 47.401 kb on + strand, within AO353_00270 at 47.487 kb on + strand, within AO353_00270 at 47.487 kb on + strand, within AO353_00270 at 47.487 kb on + strand, within AO353_00270 at 47.488 kb on - strand, within AO353_00270 at 47.488 kb on - strand, within AO353_00270 at 47.488 kb on - strand, within AO353_00270 at 47.488 kb on - strand, within AO353_00270 at 47.653 kb on + strand, within AO353_00270 at 47.654 kb on - strand, within AO353_00270 at 47.721 kb on + strand, within AO353_00270 at 47.721 kb on + strand, within AO353_00270 at 47.721 kb on + strand, within AO353_00270 at 47.721 kb on + strand, within AO353_00270 at 47.721 kb on + strand, within AO353_00270 at 47.722 kb on - strand, within AO353_00270 at 47.722 kb on - strand, within AO353_00270 at 47.722 kb on - strand, within AO353_00270 at 47.722 kb on - strand, within AO353_00270 at 47.722 kb on - strand, within AO353_00270 at 47.722 kb on - strand, within AO353_00270 at 47.741 kb on + strand, within AO353_00270 at 47.884 kb on + strand, within AO353_00270 at 47.884 kb on + strand, within AO353_00270 at 47.885 kb on - strand, within AO353_00270 at 47.885 kb on - strand, within AO353_00270 at 47.885 kb on - strand, within AO353_00270 at 47.885 kb on - strand, within AO353_00270
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 45,854 + +0.1 45,854 + +3.1 45,854 + -2.0 45,854 + +1.6 45,854 + -1.0 45,854 + -0.1 45,854 + -1.0 45,855 - +1.6 45,855 - -2.1 45,855 - -1.0 45,855 - +0.8 45,855 - +1.8 45,855 - -1.0 45,855 - +0.0 45,855 - +1.1 45,855 - +1.6 45,855 - +0.5 45,876 + -3.5 45,876 + +1.6 45,987 - -1.0 46,071 - AO353_00255 0.44 -1.4 46,071 - AO353_00255 0.44 +0.8 46,071 - AO353_00255 0.44 +1.1 46,071 - AO353_00255 0.44 -0.3 46,071 - AO353_00255 0.44 +0.7 46,071 - AO353_00255 0.44 -2.0 46,071 - AO353_00255 0.44 -1.9 46,075 - AO353_00255 0.45 +1.2 46,075 - AO353_00255 0.45 -0.2 46,086 - AO353_00255 0.47 -1.7 46,086 - AO353_00255 0.47 +0.0 46,102 - AO353_00255 0.50 -1.4 46,355 + +1.3 46,363 + +0.8 46,364 - -1.9 46,364 - +1.3 46,439 + AO353_00260 0.28 -2.6 46,439 + AO353_00260 0.28 +3.3 46,440 - AO353_00260 0.28 +1.6 46,477 + AO353_00260 0.39 +0.2 46,603 - AO353_00260 0.73 +0.2 46,603 - AO353_00260 0.73 +0.4 46,646 - AO353_00260 0.85 +1.3 46,646 - AO353_00260 0.85 +1.3 46,700 - -0.3 46,714 - -0.2 46,714 - -0.5 46,714 - -0.9 46,714 - -2.8 46,714 - +0.4 46,880 - AO353_00265 0.45 -1.6 46,968 - AO353_00265 0.83 -0.9 46,968 - AO353_00265 0.83 -0.2 46,968 - AO353_00265 0.83 +2.4 46,968 - AO353_00265 0.83 -0.9 47,005 + -1.0 47,035 + -0.9 47,035 + -0.9 47,035 + -1.2 47,035 + -2.5 47,035 + +0.2 47,035 + -1.6 47,035 + +0.3 47,036 - -0.4 47,036 - -0.5 47,036 - -2.2 47,036 - -0.5 47,036 - +0.8 47,036 - -2.7 47,038 + -1.3 47,038 + -1.4 47,038 + +0.3 47,039 - +1.6 47,039 - -0.1 47,039 - +1.1 47,088 + +0.5 47,088 + -3.6 47,088 + -1.2 47,088 + +1.6 47,088 + +0.7 47,088 + +0.0 47,088 + -0.3 47,088 + -0.8 47,088 + +0.0 47,089 - +0.0 47,089 - -1.7 47,089 - +0.0 47,089 - +1.9 47,089 - -0.7 47,133 + +0.4 47,133 + +0.4 47,133 + -2.8 47,133 + +0.4 47,133 + +1.4 47,134 - -1.6 47,134 - +0.9 47,134 - +1.3 47,134 - -1.0 47,134 - +2.1 47,192 + +0.7 47,193 - +1.9 47,204 - +0.1 47,204 - +0.8 47,214 + +0.6 47,214 + +0.2 47,215 - +2.6 47,215 - +0.2 47,215 - +1.5 47,215 - +1.0 47,289 + AO353_00270 0.10 -0.4 47,290 - AO353_00270 0.10 -0.5 47,290 - AO353_00270 0.10 +1.1 47,290 - AO353_00270 0.10 -3.0 47,316 - AO353_00270 0.11 +1.6 47,316 - AO353_00270 0.11 +1.8 47,316 - AO353_00270 0.11 -2.1 47,339 + AO353_00270 0.12 -0.7 47,340 - AO353_00270 0.12 -0.8 47,340 - AO353_00270 0.12 -1.7 47,352 + AO353_00270 0.13 -2.0 47,352 + AO353_00270 0.13 +1.5 47,353 - AO353_00270 0.13 +0.2 47,353 - AO353_00270 0.13 -2.8 47,355 + AO353_00270 0.13 +0.9 47,355 + AO353_00270 0.13 -2.5 47,356 - AO353_00270 0.13 +1.6 47,356 - AO353_00270 0.13 +0.4 47,401 + AO353_00270 0.15 -1.9 47,487 + AO353_00270 0.18 -0.4 47,487 + AO353_00270 0.18 +1.1 47,487 + AO353_00270 0.18 -0.6 47,488 - AO353_00270 0.18 -1.6 47,488 - AO353_00270 0.18 +1.6 47,488 - AO353_00270 0.18 +0.7 47,488 - AO353_00270 0.18 +0.4 47,653 + AO353_00270 0.24 +0.2 47,654 - AO353_00270 0.24 -2.1 47,721 + AO353_00270 0.26 +0.6 47,721 + AO353_00270 0.26 +0.4 47,721 + AO353_00270 0.26 -0.4 47,721 + AO353_00270 0.26 +0.0 47,721 + AO353_00270 0.26 -1.6 47,722 - AO353_00270 0.26 -2.1 47,722 - AO353_00270 0.26 +3.0 47,722 - AO353_00270 0.26 -0.3 47,722 - AO353_00270 0.26 -0.2 47,722 - AO353_00270 0.26 -1.6 47,722 - AO353_00270 0.26 +3.2 47,741 + AO353_00270 0.27 +0.4 47,884 + AO353_00270 0.32 +0.5 47,884 + AO353_00270 0.32 +2.0 47,885 - AO353_00270 0.32 -1.6 47,885 - AO353_00270 0.32 +0.6 47,885 - AO353_00270 0.32 -1.9 47,885 - AO353_00270 0.32 +0.8
Or see this region's nucleotide sequence