Strain Fitness in Shewanella loihica PV-4 around Shew_2439

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2437 and Shew_2438 are separated by 74 nucleotidesShew_2438 and Shew_2439 are separated by 114 nucleotidesShew_2439 and Shew_2440 are separated by 30 nucleotides Shew_2437: Shew_2437 - hypothetical protein (RefSeq), at 2,865,259 to 2,865,645 _2437 Shew_2438: Shew_2438 - hypothetical protein (RefSeq), at 2,865,720 to 2,866,430 _2438 Shew_2439: Shew_2439 - RND family efflux transporter MFP subunit (RefSeq), at 2,866,545 to 2,867,561 _2439 Shew_2440: Shew_2440 - acriflavin resistance protein (RefSeq), at 2,867,592 to 2,870,846 _2440 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -2 -1 0 1at 2865.642 kb on - strandat 2866.051 kb on - strand, within Shew_2438at 2866.651 kb on - strand, within Shew_2439at 2866.874 kb on + strand, within Shew_2439at 2867.867 kb on + strandat 2868.018 kb on + strand, within Shew_2440at 2868.486 kb on + strand, within Shew_2440

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,865,642 - -0.4
2,866,051 - Shew_2438 0.47 +0.5
2,866,651 - Shew_2439 0.10 +0.5
2,866,874 + Shew_2439 0.32 -1.8
2,867,867 + -0.2
2,868,018 + Shew_2440 0.13 -0.0
2,868,486 + Shew_2440 0.27 +0.7

Or see this region's nucleotide sequence