Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2251 and Shew_2252 overlap by 4 nucleotides Shew_2252 and Shew_2253 are separated by 2 nucleotides Shew_2253 and Shew_2254 overlap by 1 nucleotides
Shew_2251: Shew_2251 - anthranilate synthase component I (RefSeq), at 2,630,153 to 2,631,706
_2251
Shew_2252: Shew_2252 - anthranilate synthase component II (RefSeq), at 2,631,703 to 2,632,311
_2252
Shew_2253: Shew_2253 - anthranilate phosphoribosyltransferase (RefSeq), at 2,632,314 to 2,633,363
_2253
Shew_2254: Shew_2254 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (RefSeq), at 2,633,363 to 2,634,814
_2254
Position (kb) 2632
2633
2634 Strain fitness (log2 ratio) -2
-1
0
1 at 2631.381 kb on - strand, within Shew_2251 at 2631.381 kb on - strand, within Shew_2251 at 2632.130 kb on + strand, within Shew_2252 at 2632.578 kb on + strand, within Shew_2253 at 2632.642 kb on + strand, within Shew_2253 at 2632.692 kb on - strand, within Shew_2253 at 2633.268 kb on + strand at 2633.680 kb on + strand, within Shew_2254 at 2634.032 kb on - strand, within Shew_2254 at 2634.164 kb on - strand, within Shew_2254
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,631,381 - Shew_2251 0.79 +0.3 2,631,381 - Shew_2251 0.79 -2.1 2,632,130 + Shew_2252 0.70 -0.0 2,632,578 + Shew_2253 0.25 +0.0 2,632,642 + Shew_2253 0.31 -0.3 2,632,692 - Shew_2253 0.36 -1.1 2,633,268 + +0.5 2,633,680 + Shew_2254 0.22 -0.2 2,634,032 - Shew_2254 0.46 -0.8 2,634,164 - Shew_2254 0.55 +0.3
Or see this region's nucleotide sequence