Strain Fitness in Shewanella loihica PV-4 around Shew_2141

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2140 and Shew_2141 are separated by 281 nucleotidesShew_2141 and Shew_2142 are separated by 255 nucleotidesShew_2142 and Shew_2143 are separated by 57 nucleotides Shew_2140: Shew_2140 - hypothetical protein (RefSeq), at 2,486,164 to 2,487,036 _2140 Shew_2141: Shew_2141 - lytic murein transglycosylase (RefSeq), at 2,487,318 to 2,488,505 _2141 Shew_2142: Shew_2142 - hypothetical protein (RefSeq), at 2,488,761 to 2,489,135 _2142 Shew_2143: Shew_2143 - hypothetical protein (RefSeq), at 2,489,193 to 2,489,876 _2143 Position (kb) 2487 2488 2489Strain fitness (log2 ratio) -2 -1 0 1at 2486.641 kb on - strand, within Shew_2140at 2486.837 kb on + strand, within Shew_2140at 2487.891 kb on - strand, within Shew_2141at 2488.239 kb on - strand, within Shew_2141at 2488.347 kb on - strand, within Shew_2141at 2488.489 kb on - strandat 2488.753 kb on - strandat 2488.860 kb on + strand, within Shew_2142at 2489.364 kb on + strand, within Shew_2143

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,486,641 - Shew_2140 0.55 -2.4
2,486,837 + Shew_2140 0.77 -0.3
2,487,891 - Shew_2141 0.48 -0.5
2,488,239 - Shew_2141 0.78 -1.1
2,488,347 - Shew_2141 0.87 -0.6
2,488,489 - -0.3
2,488,753 - -0.0
2,488,860 + Shew_2142 0.26 +0.0
2,489,364 + Shew_2143 0.25 -1.0

Or see this region's nucleotide sequence