Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2137 and Shew_2138 are separated by 44 nucleotides Shew_2138 and Shew_2139 are separated by 97 nucleotides Shew_2139 and Shew_2140 are separated by 74 nucleotides Shew_2140 and Shew_2141 are separated by 281 nucleotides
Shew_2137: Shew_2137 - glutathione S-transferase domain-containing protein (RefSeq), at 2,484,221 to 2,485,240
_2137
Shew_2138: Shew_2138 - hypothetical protein (RefSeq), at 2,485,285 to 2,485,509
_2138
Shew_2139: Shew_2139 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 2,485,607 to 2,486,089
_2139
Shew_2140: Shew_2140 - hypothetical protein (RefSeq), at 2,486,164 to 2,487,036
_2140
Shew_2141: Shew_2141 - lytic murein transglycosylase (RefSeq), at 2,487,318 to 2,488,505
_2141
Position (kb)
2486
2487
2488 Strain fitness (log2 ratio)
-2
-1
0
1 at 2485.692 kb on - strand, within Shew_2139 at 2485.781 kb on + strand, within Shew_2139 at 2485.940 kb on - strand, within Shew_2139 at 2486.008 kb on - strand, within Shew_2139 at 2486.641 kb on - strand, within Shew_2140 at 2486.837 kb on + strand, within Shew_2140 at 2487.891 kb on - strand, within Shew_2141
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,485,692 - Shew_2139 0.18 +0.2 2,485,781 + Shew_2139 0.36 -1.2 2,485,940 - Shew_2139 0.69 +0.2 2,486,008 - Shew_2139 0.83 +0.2 2,486,641 - Shew_2140 0.55 -2.4 2,486,837 + Shew_2140 0.77 -0.3 2,487,891 - Shew_2141 0.48 -0.5
Or see this region's nucleotide sequence