Strain Fitness in Shewanella loihica PV-4 around Shew_0959

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0958 and Shew_0959 are separated by 147 nucleotidesShew_0959 and Shew_0960 are separated by 212 nucleotides Shew_0958: Shew_0958 - hypothetical protein (RefSeq), at 1,101,533 to 1,102,990 _0958 Shew_0959: Shew_0959 - hypothetical protein (RefSeq), at 1,103,138 to 1,103,614 _0959 Shew_0960: Shew_0960 - hypothetical protein (RefSeq), at 1,103,827 to 1,104,777 _0960 Position (kb) 1103 1104Strain fitness (log2 ratio) -1 0 1at 1102.233 kb on + strand, within Shew_0958at 1102.233 kb on + strand, within Shew_0958at 1102.622 kb on - strand, within Shew_0958at 1102.629 kb on + strand, within Shew_0958at 1102.747 kb on + strand, within Shew_0958at 1102.860 kb on + strandat 1103.251 kb on + strand, within Shew_0959at 1103.259 kb on - strand, within Shew_0959at 1103.259 kb on - strand, within Shew_0959at 1103.530 kb on + strand, within Shew_0959

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,102,233 + Shew_0958 0.48 +0.2
1,102,233 + Shew_0958 0.48 +0.5
1,102,622 - Shew_0958 0.75 +0.1
1,102,629 + Shew_0958 0.75 +0.2
1,102,747 + Shew_0958 0.83 +1.0
1,102,860 + +0.1
1,103,251 + Shew_0959 0.24 +1.5
1,103,259 - Shew_0959 0.25 +0.6
1,103,259 - Shew_0959 0.25 +0.1
1,103,530 + Shew_0959 0.82 +0.2

Or see this region's nucleotide sequence