Strain Fitness in Shewanella loihica PV-4 around Shew_0776

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0774 and Shew_0775 are separated by 144 nucleotidesShew_0775 and Shew_0776 are separated by 99 nucleotidesShew_0776 and Shew_0777 are separated by 267 nucleotides Shew_0774: Shew_0774 - peptidase S9B dipeptidylpeptidase IV subunit (RefSeq), at 884,145 to 886,397 _0774 Shew_0775: Shew_0775 - TetR family transcriptional regulator (RefSeq), at 886,542 to 887,099 _0775 Shew_0776: Shew_0776 - deaminase-reductase domain-containing protein (RefSeq), at 887,199 to 887,735 _0776 Shew_0777: Shew_0777 - two-component response regulator (RefSeq), at 888,003 to 888,722 _0777 Position (kb) 887 888Strain fitness (log2 ratio) -2 -1 0 1 2 3at 886.271 kb on + strandat 886.274 kb on - strandat 886.405 kb on + strandat 886.413 kb on - strandat 886.852 kb on + strand, within Shew_0775at 886.866 kb on - strand, within Shew_0775at 886.892 kb on + strand, within Shew_0775at 886.893 kb on + strand, within Shew_0775at 886.901 kb on - strand, within Shew_0775at 886.988 kb on + strand, within Shew_0775at 887.184 kb on + strandat 887.190 kb on - strandat 887.281 kb on - strand, within Shew_0776at 887.393 kb on + strand, within Shew_0776at 887.401 kb on - strand, within Shew_0776at 887.401 kb on - strand, within Shew_0776at 887.401 kb on - strand, within Shew_0776at 887.401 kb on - strand, within Shew_0776at 887.401 kb on - strand, within Shew_0776at 887.401 kb on - strand, within Shew_0776at 887.420 kb on + strand, within Shew_0776at 887.426 kb on + strand, within Shew_0776at 887.526 kb on + strand, within Shew_0776at 887.526 kb on - strand, within Shew_0776at 887.536 kb on - strand, within Shew_0776at 887.536 kb on - strand, within Shew_0776at 887.536 kb on - strand, within Shew_0776at 887.561 kb on - strand, within Shew_0776at 887.688 kb on + strandat 887.696 kb on - strandat 887.906 kb on + strandat 888.199 kb on - strand, within Shew_0777at 888.218 kb on - strand, within Shew_0777at 888.526 kb on - strand, within Shew_0777

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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886,271 + +0.2
886,274 - +0.4
886,405 + -0.1
886,413 - +0.1
886,852 + Shew_0775 0.56 +0.2
886,866 - Shew_0775 0.58 +0.6
886,892 + Shew_0775 0.63 +1.7
886,893 + Shew_0775 0.63 +0.1
886,901 - Shew_0775 0.64 +0.3
886,988 + Shew_0775 0.80 -0.1
887,184 + -0.0
887,190 - +0.8
887,281 - Shew_0776 0.15 -0.1
887,393 + Shew_0776 0.36 -0.8
887,401 - Shew_0776 0.38 +0.9
887,401 - Shew_0776 0.38 -0.5
887,401 - Shew_0776 0.38 +0.3
887,401 - Shew_0776 0.38 +0.3
887,401 - Shew_0776 0.38 -0.4
887,401 - Shew_0776 0.38 -1.3
887,420 + Shew_0776 0.41 -0.1
887,426 + Shew_0776 0.42 +0.1
887,526 + Shew_0776 0.61 +0.6
887,526 - Shew_0776 0.61 -1.6
887,536 - Shew_0776 0.63 +0.3
887,536 - Shew_0776 0.63 +0.1
887,536 - Shew_0776 0.63 +0.3
887,561 - Shew_0776 0.67 -1.1
887,688 + +0.6
887,696 - -1.9
887,906 + +0.6
888,199 - Shew_0777 0.27 +2.7
888,218 - Shew_0777 0.30 +2.5
888,526 - Shew_0777 0.73 +3.2

Or see this region's nucleotide sequence