Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0763 and Shew_0764 are separated by 186 nucleotides Shew_0764 and Shew_0765 are separated by 138 nucleotides
Shew_0763: Shew_0763 - putative PAS/PAC sensor protein (RefSeq), at 867,403 to 869,619
_0763
Shew_0764: Shew_0764 - radical SAM domain-containing protein (RefSeq), at 869,806 to 870,408
_0764
Shew_0765: Shew_0765 - acriflavin resistance protein (RefSeq), at 870,547 to 873,696
_0765
Position (kb) 869
870
871 Strain fitness (log2 ratio) -1
0
1
2
3 at 868.989 kb on - strand, within Shew_0763 at 869.055 kb on + strand, within Shew_0763 at 869.135 kb on + strand, within Shew_0763 at 869.301 kb on + strand, within Shew_0763 at 869.388 kb on + strand, within Shew_0763 at 869.450 kb on - strand at 870.182 kb on - strand, within Shew_0764 at 870.222 kb on + strand, within Shew_0764 at 870.335 kb on - strand, within Shew_0764 at 870.396 kb on - strand at 870.402 kb on + strand at 870.545 kb on + strand at 870.665 kb on - strand at 870.665 kb on - strand at 870.944 kb on + strand, within Shew_0765 at 871.092 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.305 kb on + strand, within Shew_0765 at 871.313 kb on - strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.342 kb on + strand, within Shew_0765 at 871.385 kb on + strand, within Shew_0765
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 868,989 - Shew_0763 0.72 +3.3 869,055 + Shew_0763 0.75 +3.2 869,135 + Shew_0763 0.78 +3.2 869,301 + Shew_0763 0.86 +3.7 869,388 + Shew_0763 0.90 +2.5 869,450 - +2.5 870,182 - Shew_0764 0.62 +0.8 870,222 + Shew_0764 0.69 +0.3 870,335 - Shew_0764 0.88 +0.9 870,396 - +0.3 870,402 + -1.4 870,545 + -0.5 870,665 - -0.4 870,665 - +0.6 870,944 + Shew_0765 0.13 -1.2 871,092 + Shew_0765 0.17 -1.5 871,305 + Shew_0765 0.24 -0.2 871,305 + Shew_0765 0.24 +1.3 871,305 + Shew_0765 0.24 +0.1 871,313 - Shew_0765 0.24 -1.2 871,342 + Shew_0765 0.25 +0.6 871,342 + Shew_0765 0.25 -0.1 871,342 + Shew_0765 0.25 -0.1 871,385 + Shew_0765 0.27 +0.1
Or see this region's nucleotide sequence