Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0725 and Shew_0726 are separated by 127 nucleotides Shew_0726 and Shew_0727 overlap by 1 nucleotides
Shew_0725: Shew_0725 - hypothetical protein (RefSeq), at 824,767 to 825,963
_0725
Shew_0726: Shew_0726 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 826,091 to 827,575
_0726
Shew_0727: Shew_0727 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 827,575 to 828,948
_0727
Position (kb) 826
827
828 Strain fitness (log2 ratio) -1
0
1
2
3 at 825.161 kb on + strand, within Shew_0725 at 825.257 kb on + strand, within Shew_0725 at 825.632 kb on + strand, within Shew_0725 at 825.640 kb on - strand, within Shew_0725 at 825.645 kb on - strand, within Shew_0725 at 825.733 kb on - strand, within Shew_0725 at 825.755 kb on - strand, within Shew_0725 at 826.411 kb on + strand, within Shew_0726 at 826.576 kb on - strand, within Shew_0726 at 826.622 kb on - strand, within Shew_0726 at 826.950 kb on - strand, within Shew_0726 at 827.125 kb on + strand, within Shew_0726 at 827.149 kb on + strand, within Shew_0726 at 827.157 kb on + strand, within Shew_0726 at 827.157 kb on + strand, within Shew_0726 at 827.286 kb on + strand, within Shew_0726 at 827.309 kb on - strand, within Shew_0726 at 827.639 kb on + strand at 827.684 kb on - strand at 828.259 kb on - strand, within Shew_0727 at 828.418 kb on - strand, within Shew_0727
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 825,161 + Shew_0725 0.33 +0.8 825,257 + Shew_0725 0.41 +0.3 825,632 + Shew_0725 0.72 -1.2 825,640 - Shew_0725 0.73 -0.9 825,645 - Shew_0725 0.73 +0.1 825,733 - Shew_0725 0.81 +1.2 825,755 - Shew_0725 0.83 +0.4 826,411 + Shew_0726 0.22 -0.9 826,576 - Shew_0726 0.33 -0.7 826,622 - Shew_0726 0.36 -0.0 826,950 - Shew_0726 0.58 -0.4 827,125 + Shew_0726 0.70 -1.3 827,149 + Shew_0726 0.71 -0.5 827,157 + Shew_0726 0.72 +0.4 827,157 + Shew_0726 0.72 -0.2 827,286 + Shew_0726 0.80 +0.0 827,309 - Shew_0726 0.82 +0.2 827,639 + +2.9 827,684 - -0.3 828,259 - Shew_0727 0.50 +0.1 828,418 - Shew_0727 0.61 +0.3
Or see this region's nucleotide sequence