Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0486 and Shew_0487 are separated by 27 nucleotides Shew_0487 and Shew_0488 are separated by 10 nucleotides Shew_0488 and Shew_0489 are separated by 277 nucleotides
Shew_0486: Shew_0486 - permease (RefSeq), at 543,518 to 544,534
_0486
Shew_0487: Shew_0487 - redox-active disulfide protein 2 (RefSeq), at 544,562 to 544,810
_0487
Shew_0488: Shew_0488 - ArsR family transcriptional regulator (RefSeq), at 544,821 to 545,225
_0488
Shew_0489: Shew_0489 - hypothetical protein (RefSeq), at 545,503 to 545,931
_0489
Position (kb) 544
545 Strain fitness (log2 ratio) -1
0
1
2 at 543.567 kb on - strand at 543.679 kb on - strand, within Shew_0486 at 543.679 kb on - strand, within Shew_0486 at 543.778 kb on + strand, within Shew_0486 at 544.116 kb on + strand, within Shew_0486 at 544.116 kb on + strand, within Shew_0486 at 544.250 kb on + strand, within Shew_0486 at 544.321 kb on + strand, within Shew_0486 at 544.321 kb on + strand, within Shew_0486 at 544.402 kb on + strand, within Shew_0486 at 544.412 kb on + strand, within Shew_0486 at 544.542 kb on + strand at 544.542 kb on + strand at 544.542 kb on + strand at 544.542 kb on + strand at 544.542 kb on + strand at 544.550 kb on - strand at 544.550 kb on - strand at 544.550 kb on - strand at 544.631 kb on + strand, within Shew_0487 at 544.835 kb on + strand at 544.942 kb on - strand, within Shew_0488 at 545.058 kb on - strand, within Shew_0488 at 545.394 kb on + strand at 545.465 kb on + strand at 545.520 kb on + strand at 545.550 kb on + strand, within Shew_0489 at 545.550 kb on + strand, within Shew_0489 at 545.588 kb on + strand, within Shew_0489
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 543,567 - -0.1 543,679 - Shew_0486 0.16 +0.1 543,679 - Shew_0486 0.16 +0.3 543,778 + Shew_0486 0.26 +0.1 544,116 + Shew_0486 0.59 -0.0 544,116 + Shew_0486 0.59 -0.3 544,250 + Shew_0486 0.72 -0.5 544,321 + Shew_0486 0.79 -0.1 544,321 + Shew_0486 0.79 -1.4 544,402 + Shew_0486 0.87 +0.2 544,412 + Shew_0486 0.88 +2.6 544,542 + +0.1 544,542 + +0.3 544,542 + +0.3 544,542 + +0.5 544,542 + +1.3 544,550 - +1.0 544,550 - -0.2 544,550 - +0.3 544,631 + Shew_0487 0.28 -0.7 544,835 + -0.1 544,942 - Shew_0488 0.30 -0.3 545,058 - Shew_0488 0.59 +0.5 545,394 + +0.4 545,465 + +0.5 545,520 + -0.0 545,550 + Shew_0489 0.11 +1.1 545,550 + Shew_0489 0.11 +0.0 545,588 + Shew_0489 0.20 +0.0
Or see this region's nucleotide sequence