Experiment: Succinic Acid; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3632 and Rru_A3633 are separated by 51 nucleotides Rru_A3633 and Rru_A3634 are separated by 71 nucleotides Rru_A3634 and Rru_A3635 overlap by 4 nucleotides Rru_A3635 and Rru_A3636 are separated by 25 nucleotides
Rru_A3632: Rru_A3632 - hypothetical protein (NCBI), at 4,173,715 to 4,174,320
_A3632
Rru_A3633: Rru_A3633 - Thiamine monophosphate synthase (NCBI), at 4,174,372 to 4,175,190
_A3633
Rru_A3634: Rru_A3634 - Protein of unknown function UPF0001 (NCBI), at 4,175,262 to 4,175,990
_A3634
Rru_A3635: Rru_A3635 - hypothetical protein (NCBI), at 4,175,987 to 4,176,490
_A3635
Rru_A3636: Rru_A3636 - hypothetical protein (NCBI), at 4,176,516 to 4,177,910
_A3636
Position (kb) 4175
4176 Strain fitness (log2 ratio) -1
0
1
2 at 4174.397 kb on - strand at 4175.098 kb on + strand, within Rru_A3633 at 4175.099 kb on - strand, within Rru_A3633 at 4175.099 kb on - strand, within Rru_A3633 at 4175.137 kb on + strand at 4175.137 kb on + strand at 4175.154 kb on + strand at 4175.154 kb on + strand at 4175.166 kb on + strand at 4175.684 kb on + strand, within Rru_A3634 at 4176.149 kb on - strand, within Rru_A3635 at 4176.239 kb on - strand, within Rru_A3635 at 4176.239 kb on - strand, within Rru_A3635 at 4176.240 kb on + strand, within Rru_A3635 at 4176.241 kb on - strand, within Rru_A3635 at 4176.514 kb on + strand at 4176.515 kb on - strand at 4176.515 kb on - strand at 4176.568 kb on + strand at 4176.828 kb on - strand, within Rru_A3636 at 4176.828 kb on - strand, within Rru_A3636 at 4176.828 kb on - strand, within Rru_A3636 at 4176.967 kb on + strand, within Rru_A3636 at 4176.967 kb on + strand, within Rru_A3636
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 38 uM remove 4,174,397 - +0.6 4,175,098 + Rru_A3633 0.89 +0.1 4,175,099 - Rru_A3633 0.89 +1.5 4,175,099 - Rru_A3633 0.89 +2.1 4,175,137 + +0.5 4,175,137 + +0.1 4,175,154 + +0.1 4,175,154 + +0.3 4,175,166 + +0.1 4,175,684 + Rru_A3634 0.58 +1.2 4,176,149 - Rru_A3635 0.32 +1.9 4,176,239 - Rru_A3635 0.50 +0.1 4,176,239 - Rru_A3635 0.50 +1.6 4,176,240 + Rru_A3635 0.50 +0.1 4,176,241 - Rru_A3635 0.50 +1.9 4,176,514 + +0.2 4,176,515 - +0.1 4,176,515 - +0.1 4,176,568 + +1.0 4,176,828 - Rru_A3636 0.22 +0.1 4,176,828 - Rru_A3636 0.22 +0.1 4,176,828 - Rru_A3636 0.22 +0.1 4,176,967 + Rru_A3636 0.32 +0.4 4,176,967 + Rru_A3636 0.32 -1.0
Or see this region's nucleotide sequence