Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2607

Experiment: Succinic Acid; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2606 and Rru_A2607 are separated by 240 nucleotidesRru_A2607 and Rru_A2608 are separated by 8 nucleotidesRru_A2608 and Rru_A2609 are separated by 400 nucleotides Rru_A2606: Rru_A2606 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 3,030,546 to 3,032,540 _A2606 Rru_A2607: Rru_A2607 - hypothetical protein (NCBI), at 3,032,781 to 3,033,320 _A2607 Rru_A2608: Rru_A2608 - hypothetical protein (NCBI), at 3,033,329 to 3,033,616 _A2608 Rru_A2609: Rru_A2609 - hypothetical protein (NCBI), at 3,034,017 to 3,034,637 _A2609 Position (kb) 3032 3033 3034Strain fitness (log2 ratio) -2 -1 0 1 2at 3031.954 kb on + strand, within Rru_A2606at 3031.954 kb on + strand, within Rru_A2606at 3031.955 kb on - strand, within Rru_A2606at 3031.957 kb on + strand, within Rru_A2606at 3031.958 kb on - strand, within Rru_A2606at 3031.958 kb on - strand, within Rru_A2606at 3031.958 kb on - strand, within Rru_A2606at 3031.994 kb on - strand, within Rru_A2606at 3032.387 kb on + strandat 3032.388 kb on - strandat 3032.406 kb on - strandat 3032.608 kb on + strandat 3032.608 kb on + strandat 3032.608 kb on + strandat 3032.608 kb on + strandat 3032.609 kb on - strandat 3032.609 kb on - strandat 3032.609 kb on - strandat 3032.609 kb on - strandat 3032.755 kb on - strandat 3032.825 kb on - strandat 3032.997 kb on + strand, within Rru_A2607at 3032.998 kb on - strand, within Rru_A2607at 3033.033 kb on + strand, within Rru_A2607at 3033.033 kb on + strand, within Rru_A2607at 3033.034 kb on - strand, within Rru_A2607at 3033.034 kb on - strand, within Rru_A2607at 3033.061 kb on + strand, within Rru_A2607at 3033.061 kb on + strand, within Rru_A2607at 3033.061 kb on + strand, within Rru_A2607at 3033.062 kb on - strand, within Rru_A2607at 3033.062 kb on - strand, within Rru_A2607at 3033.062 kb on - strand, within Rru_A2607at 3033.062 kb on - strand, within Rru_A2607at 3033.062 kb on - strand, within Rru_A2607at 3033.102 kb on + strand, within Rru_A2607at 3033.193 kb on + strand, within Rru_A2607at 3033.194 kb on - strand, within Rru_A2607at 3033.608 kb on - strandat 3033.614 kb on + strandat 3033.614 kb on + strandat 3033.614 kb on + strandat 3033.615 kb on - strandat 3033.817 kb on + strandat 3033.818 kb on - strandat 3033.938 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 38 uM
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3,031,954 + Rru_A2606 0.71 -1.8
3,031,954 + Rru_A2606 0.71 -0.0
3,031,955 - Rru_A2606 0.71 -0.4
3,031,957 + Rru_A2606 0.71 +0.7
3,031,958 - Rru_A2606 0.71 -0.0
3,031,958 - Rru_A2606 0.71 -1.0
3,031,958 - Rru_A2606 0.71 -1.0
3,031,994 - Rru_A2606 0.73 -0.0
3,032,387 + -0.7
3,032,388 - -0.1
3,032,406 - +0.3
3,032,608 + -0.0
3,032,608 + -0.0
3,032,608 + +0.5
3,032,608 + +1.1
3,032,609 - -0.0
3,032,609 - -0.1
3,032,609 - -0.0
3,032,609 - -0.0
3,032,755 - +0.2
3,032,825 - +1.1
3,032,997 + Rru_A2607 0.40 +0.8
3,032,998 - Rru_A2607 0.40 -0.0
3,033,033 + Rru_A2607 0.47 +0.5
3,033,033 + Rru_A2607 0.47 +0.1
3,033,034 - Rru_A2607 0.47 +0.2
3,033,034 - Rru_A2607 0.47 -0.1
3,033,061 + Rru_A2607 0.52 -0.7
3,033,061 + Rru_A2607 0.52 +1.1
3,033,061 + Rru_A2607 0.52 -0.0
3,033,062 - Rru_A2607 0.52 +0.8
3,033,062 - Rru_A2607 0.52 +0.3
3,033,062 - Rru_A2607 0.52 -0.7
3,033,062 - Rru_A2607 0.52 +0.8
3,033,062 - Rru_A2607 0.52 -0.0
3,033,102 + Rru_A2607 0.59 -1.0
3,033,193 + Rru_A2607 0.76 +0.8
3,033,194 - Rru_A2607 0.76 +1.0
3,033,608 - -0.0
3,033,614 + +2.0
3,033,614 + -0.0
3,033,614 + +0.2
3,033,615 - -0.0
3,033,817 + -0.0
3,033,818 - -1.0
3,033,938 + -0.0

Or see this region's nucleotide sequence