Experiment: Succinic Acid; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2606 and Rru_A2607 are separated by 240 nucleotides Rru_A2607 and Rru_A2608 are separated by 8 nucleotides Rru_A2608 and Rru_A2609 are separated by 400 nucleotides
Rru_A2606: Rru_A2606 - Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI), at 3,030,546 to 3,032,540
_A2606
Rru_A2607: Rru_A2607 - hypothetical protein (NCBI), at 3,032,781 to 3,033,320
_A2607
Rru_A2608: Rru_A2608 - hypothetical protein (NCBI), at 3,033,329 to 3,033,616
_A2608
Rru_A2609: Rru_A2609 - hypothetical protein (NCBI), at 3,034,017 to 3,034,637
_A2609
Position (kb)
3032
3033
3034 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3031.954 kb on + strand, within Rru_A2606 at 3031.954 kb on + strand, within Rru_A2606 at 3031.955 kb on - strand, within Rru_A2606 at 3031.957 kb on + strand, within Rru_A2606 at 3031.958 kb on - strand, within Rru_A2606 at 3031.958 kb on - strand, within Rru_A2606 at 3031.958 kb on - strand, within Rru_A2606 at 3031.994 kb on - strand, within Rru_A2606 at 3032.387 kb on + strand at 3032.388 kb on - strand at 3032.406 kb on - strand at 3032.608 kb on + strand at 3032.608 kb on + strand at 3032.608 kb on + strand at 3032.608 kb on + strand at 3032.609 kb on - strand at 3032.609 kb on - strand at 3032.609 kb on - strand at 3032.609 kb on - strand at 3032.755 kb on - strand at 3032.825 kb on - strand at 3032.997 kb on + strand, within Rru_A2607 at 3032.998 kb on - strand, within Rru_A2607 at 3033.033 kb on + strand, within Rru_A2607 at 3033.033 kb on + strand, within Rru_A2607 at 3033.034 kb on - strand, within Rru_A2607 at 3033.034 kb on - strand, within Rru_A2607 at 3033.061 kb on + strand, within Rru_A2607 at 3033.061 kb on + strand, within Rru_A2607 at 3033.061 kb on + strand, within Rru_A2607 at 3033.062 kb on - strand, within Rru_A2607 at 3033.062 kb on - strand, within Rru_A2607 at 3033.062 kb on - strand, within Rru_A2607 at 3033.062 kb on - strand, within Rru_A2607 at 3033.062 kb on - strand, within Rru_A2607 at 3033.102 kb on + strand, within Rru_A2607 at 3033.193 kb on + strand, within Rru_A2607 at 3033.194 kb on - strand, within Rru_A2607 at 3033.608 kb on - strand at 3033.614 kb on + strand at 3033.614 kb on + strand at 3033.614 kb on + strand at 3033.615 kb on - strand at 3033.817 kb on + strand at 3033.818 kb on - strand at 3033.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 38 uM remove 3,031,954 + Rru_A2606 0.71 -1.8 3,031,954 + Rru_A2606 0.71 -0.0 3,031,955 - Rru_A2606 0.71 -0.4 3,031,957 + Rru_A2606 0.71 +0.7 3,031,958 - Rru_A2606 0.71 -0.0 3,031,958 - Rru_A2606 0.71 -1.0 3,031,958 - Rru_A2606 0.71 -1.0 3,031,994 - Rru_A2606 0.73 -0.0 3,032,387 + -0.7 3,032,388 - -0.1 3,032,406 - +0.3 3,032,608 + -0.0 3,032,608 + -0.0 3,032,608 + +0.5 3,032,608 + +1.1 3,032,609 - -0.0 3,032,609 - -0.1 3,032,609 - -0.0 3,032,609 - -0.0 3,032,755 - +0.2 3,032,825 - +1.1 3,032,997 + Rru_A2607 0.40 +0.8 3,032,998 - Rru_A2607 0.40 -0.0 3,033,033 + Rru_A2607 0.47 +0.5 3,033,033 + Rru_A2607 0.47 +0.1 3,033,034 - Rru_A2607 0.47 +0.2 3,033,034 - Rru_A2607 0.47 -0.1 3,033,061 + Rru_A2607 0.52 -0.7 3,033,061 + Rru_A2607 0.52 +1.1 3,033,061 + Rru_A2607 0.52 -0.0 3,033,062 - Rru_A2607 0.52 +0.8 3,033,062 - Rru_A2607 0.52 +0.3 3,033,062 - Rru_A2607 0.52 -0.7 3,033,062 - Rru_A2607 0.52 +0.8 3,033,062 - Rru_A2607 0.52 -0.0 3,033,102 + Rru_A2607 0.59 -1.0 3,033,193 + Rru_A2607 0.76 +0.8 3,033,194 - Rru_A2607 0.76 +1.0 3,033,608 - -0.0 3,033,614 + +2.0 3,033,614 + -0.0 3,033,614 + +0.2 3,033,615 - -0.0 3,033,817 + -0.0 3,033,818 - -1.0 3,033,938 + -0.0
Or see this region's nucleotide sequence