Experiment: Succinic Acid; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1767 and Rru_A1768 overlap by 4 nucleotides Rru_A1768 and Rru_A1769 are separated by 25 nucleotides Rru_A1769 and Rru_A1770 overlap by 1 nucleotides
Rru_A1767: Rru_A1767 - peptidase M23B (NCBI), at 2,059,422 to 2,060,819
_A1767
Rru_A1768: Rru_A1768 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase (NCBI), at 2,060,816 to 2,061,475
_A1768
Rru_A1769: Rru_A1769 - Acid phosphatase (NCBI), at 2,061,501 to 2,062,286
_A1769
Rru_A1770: Rru_A1770 - Serine--tRNA ligase (NCBI), at 2,062,286 to 2,063,557
_A1770
Position (kb)
2060
2061
2062 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2060.413 kb on + strand, within Rru_A1767 at 2060.413 kb on + strand, within Rru_A1767 at 2060.558 kb on - strand, within Rru_A1767 at 2060.584 kb on + strand, within Rru_A1767 at 2060.675 kb on + strand, within Rru_A1767 at 2060.722 kb on - strand at 2060.724 kb on - strand at 2060.724 kb on - strand at 2060.724 kb on - strand at 2060.724 kb on - strand at 2060.724 kb on - strand at 2060.754 kb on - strand at 2060.754 kb on - strand at 2060.754 kb on - strand at 2060.756 kb on - strand at 2061.169 kb on + strand, within Rru_A1768 at 2061.170 kb on - strand, within Rru_A1768 at 2061.171 kb on + strand, within Rru_A1768 at 2061.172 kb on - strand, within Rru_A1768 at 2061.172 kb on - strand, within Rru_A1768 at 2061.339 kb on + strand, within Rru_A1768 at 2061.339 kb on + strand, within Rru_A1768 at 2061.950 kb on - strand, within Rru_A1769
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 38 uM remove 2,060,413 + Rru_A1767 0.71 -0.1 2,060,413 + Rru_A1767 0.71 -0.1 2,060,558 - Rru_A1767 0.81 -0.1 2,060,584 + Rru_A1767 0.83 -0.1 2,060,675 + Rru_A1767 0.90 -0.1 2,060,722 - -0.1 2,060,724 - -0.1 2,060,724 - -0.1 2,060,724 - -0.0 2,060,724 - -0.1 2,060,724 - -0.1 2,060,754 - +2.9 2,060,754 - +1.7 2,060,754 - +1.2 2,060,756 - +1.1 2,061,169 + Rru_A1768 0.53 +1.2 2,061,170 - Rru_A1768 0.54 +1.5 2,061,171 + Rru_A1768 0.54 +2.2 2,061,172 - Rru_A1768 0.54 +1.2 2,061,172 - Rru_A1768 0.54 +1.1 2,061,339 + Rru_A1768 0.79 +1.3 2,061,339 + Rru_A1768 0.79 +2.1 2,061,950 - Rru_A1769 0.57 -0.1
Or see this region's nucleotide sequence