Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1046

Experiment: Succinic Acid; Light intensity 38 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid; Light intensity 38 uM
1,237,059	-		Rru_A1044	0.78	+0.8
1,237,059	-		Rru_A1044	0.78	+0.5
1,237,059	-		Rru_A1044	0.78	-0.0
1,237,059	-		Rru_A1044	0.78	-0.0
1,237,083	-		Rru_A1044	0.83	+1.0
1,237,166	+				+2.0
1,237,166	+				-0.0
1,237,167	-				-0.0
1,237,167	-				-0.0
1,237,172	+				+0.1
1,237,172	+				-0.9
1,237,172	+				-0.6
1,237,173	-				-0.0
1,237,173	-				+3.0
1,237,173	-				+1.0
1,237,173	-				+2.2
1,237,280	+				-0.0
1,237,280	+				+1.5
1,237,280	+				+2.1
1,237,281	-				-0.0
1,237,281	-				-0.0
1,237,281	-				-0.0
1,237,637	+		Rru_A1045	0.54	-0.0
1,237,638	-		Rru_A1045	0.54	+1.5
1,237,638	-		Rru_A1045	0.54	+1.0
1,237,638	-		Rru_A1045	0.54	+1.5
1,237,638	-		Rru_A1045	0.54	-0.0
1,237,638	-		Rru_A1045	0.54	+0.1
1,237,697	+		Rru_A1045	0.63	+1.6
1,237,697	+		Rru_A1045	0.63	+2.0
1,237,698	-		Rru_A1045	0.63	+1.0
1,237,698	-		Rru_A1045	0.63	+1.7
1,237,699	+		Rru_A1045	0.63	+1.4
1,237,727	+		Rru_A1045	0.67	-0.6
1,237,728	-		Rru_A1045	0.67	-0.0
1,237,728	-		Rru_A1045	0.67	-0.0
1,237,728	-		Rru_A1045	0.67	+2.4
1,237,759	+		Rru_A1045	0.72	+0.7
1,237,760	-		Rru_A1045	0.72	+1.8
1,237,760	-		Rru_A1045	0.72	-0.0
1,237,905	+				-0.3
1,237,905	+				+0.3
1,237,906	-				+1.1
1,238,197	+				+0.8
1,238,197	+				-0.0
1,238,198	-				+0.4
1,238,198	-				-0.0
1,238,198	-				-0.0
1,238,199	+				-0.0
1,238,199	+				-0.0
1,238,200	-				-0.0
1,238,200	-				+1.6
1,238,200	-				-0.0
1,238,200	-				+0.6
1,238,448	+		Rru_A1046	0.23	+1.1
1,238,448	+		Rru_A1046	0.23	-0.0
1,238,448	+		Rru_A1046	0.23	+0.7
1,238,449	-		Rru_A1046	0.23	+1.3
1,238,449	-		Rru_A1046	0.23	+1.3
1,238,449	-		Rru_A1046	0.23	-0.0
1,238,449	-		Rru_A1046	0.23	-0.0
1,238,449	-		Rru_A1046	0.23	-0.0
1,238,449	-		Rru_A1046	0.23	-0.0
1,238,449	-		Rru_A1046	0.23	-0.0
1,238,449	-		Rru_A1046	0.23	-0.0
1,238,449	-		Rru_A1046	0.23	-0.0
1,238,449	-		Rru_A1046	0.23	+1.1
1,238,449	-		Rru_A1046	0.23	+1.5
1,238,449	-		Rru_A1046	0.23	-0.0
1,238,449	-		Rru_A1046	0.23	+0.8
1,238,449	-		Rru_A1046	0.23	-1.0
1,238,452	+		Rru_A1046	0.23	+0.0
1,238,452	+		Rru_A1046	0.23	-0.0
1,238,453	-		Rru_A1046	0.23	-1.0
1,238,453	-		Rru_A1046	0.23	+0.9
1,238,453	-		Rru_A1046	0.23	+1.0
1,238,453	-		Rru_A1046	0.23	-1.0
1,238,453	-		Rru_A1046	0.23	+0.9
1,238,453	-		Rru_A1046	0.23	-0.0
1,238,454	+		Rru_A1046	0.23	-0.0
1,238,455	-		Rru_A1046	0.23	-1.0
1,238,455	-		Rru_A1046	0.23	-0.0
1,238,455	-		Rru_A1046	0.23	-0.2
1,238,455	-		Rru_A1046	0.23	-0.0
1,238,493	+		Rru_A1046	0.25	-0.0
1,238,493	+		Rru_A1046	0.25	+0.8
1,238,493	+		Rru_A1046	0.25	-0.0
1,238,494	-		Rru_A1046	0.25	+1.2
1,238,497	-		Rru_A1046	0.25	+2.4
1,238,517	+		Rru_A1046	0.26	-0.0
1,238,518	-		Rru_A1046	0.26	-0.0
1,238,856	+		Rru_A1046	0.44	-0.0
1,238,856	+		Rru_A1046	0.44	+1.1
1,238,857	-		Rru_A1046	0.44	+1.6
1,238,857	-		Rru_A1046	0.44	+2.4
1,239,043	+		Rru_A1046	0.54	+1.2
1,239,043	+		Rru_A1046	0.54	+0.1
1,239,044	-		Rru_A1046	0.54	+0.4
1,239,045	+		Rru_A1046	0.54	-0.0
1,239,045	+		Rru_A1046	0.54	+0.4
1,239,045	+		Rru_A1046	0.54	+0.7
1,239,045	+		Rru_A1046	0.54	+0.6
1,239,046	-		Rru_A1046	0.54	+1.2
1,239,046	-		Rru_A1046	0.54	-0.0
1,239,111	+		Rru_A1046	0.58	-0.0
1,239,111	+		Rru_A1046	0.58	+1.0
1,239,199	+		Rru_A1046	0.62	+0.9
1,239,199	+		Rru_A1046	0.62	+0.7
1,239,199	+		Rru_A1046	0.62	-1.0
1,239,200	-		Rru_A1046	0.62	+1.8
1,239,200	-		Rru_A1046	0.62	-0.0
1,239,200	-		Rru_A1046	0.62	+2.8
1,239,200	-		Rru_A1046	0.62	+0.7
1,239,201	+		Rru_A1046	0.62	+1.0
1,239,208	+		Rru_A1046	0.63	+0.2
1,239,209	-		Rru_A1046	0.63	+0.0
1,239,209	-		Rru_A1046	0.63	-0.0
1,239,209	-		Rru_A1046	0.63	+0.9
1,239,209	-		Rru_A1046	0.63	-1.0
1,239,209	-		Rru_A1046	0.63	+1.9
1,239,210	+		Rru_A1046	0.63	+0.7
1,239,210	+		Rru_A1046	0.63	-0.0
1,239,211	-		Rru_A1046	0.63	+0.7
1,239,211	-		Rru_A1046	0.63	+0.5
1,239,211	-		Rru_A1046	0.63	+1.2
1,239,211	-		Rru_A1046	0.63	-0.0
1,239,211	-		Rru_A1046	0.63	+1.1
1,239,283	+		Rru_A1046	0.67	-0.0
1,239,388	+		Rru_A1046	0.72	-0.0
1,239,388	+		Rru_A1046	0.72	-0.0
1,239,388	+		Rru_A1046	0.72	-1.0
1,239,388	+		Rru_A1046	0.72	-1.0
1,239,389	-		Rru_A1046	0.72	-0.0
1,239,389	-		Rru_A1046	0.72	+0.7
1,239,390	+		Rru_A1046	0.72	+1.2
1,239,390	+		Rru_A1046	0.72	-0.0
1,239,390	+		Rru_A1046	0.72	+0.4
1,239,391	-		Rru_A1046	0.72	-2.7
1,239,568	+		Rru_A1046	0.82	+0.5
1,239,568	+		Rru_A1046	0.82	+1.3
1,239,569	-		Rru_A1046	0.82	+1.9
1,239,570	+		Rru_A1046	0.82	+1.5
1,239,570	+		Rru_A1046	0.82	-0.0
1,239,570	+		Rru_A1046	0.82	+0.7
1,239,570	+		Rru_A1046	0.82	+0.8
1,239,570	+		Rru_A1046	0.82	-0.0
1,239,570	+		Rru_A1046	0.82	+1.0
1,239,570	+		Rru_A1046	0.82	-0.0
1,239,570	+		Rru_A1046	0.82	+0.4
1,239,570	+		Rru_A1046	0.82	-0.0
1,239,570	+		Rru_A1046	0.82	+0.6
1,239,571	-		Rru_A1046	0.82	+1.0
1,239,571	-		Rru_A1046	0.82	+0.7
1,239,571	-		Rru_A1046	0.82	-0.0
1,239,571	-		Rru_A1046	0.82	+0.8
1,239,652	+		Rru_A1046	0.86	-0.0
1,239,652	+		Rru_A1046	0.86	+0.8
1,239,653	-		Rru_A1046	0.86	+0.7
1,239,653	-		Rru_A1046	0.86	-0.0
1,239,653	-		Rru_A1046	0.86	-0.0
1,239,693	+		Rru_A1046	0.88	+1.3
1,239,693	+		Rru_A1046	0.88	-0.0
1,239,693	+		Rru_A1046	0.88	-0.0
1,239,693	+		Rru_A1046	0.88	+1.1
1,239,693	+		Rru_A1046	0.88	-0.0
1,239,693	+		Rru_A1046	0.88	-0.0
1,239,693	+		Rru_A1046	0.88	+1.7
1,239,693	+		Rru_A1046	0.88	-1.0
1,239,694	-		Rru_A1046	0.88	+2.0
1,239,694	-		Rru_A1046	0.88	-0.0
1,239,694	-		Rru_A1046	0.88	+0.3
1,239,694	-		Rru_A1046	0.88	-0.9
1,239,748	+				+0.2
1,239,750	+				+1.3
1,239,750	+				+1.3
1,239,750	+				+1.2
1,239,750	+				+1.1
1,239,750	+				-0.0
1,239,751	-				-0.0
1,239,751	-				+0.2
1,239,751	-				-0.0
1,239,751	-				+0.8
1,239,751	-				-0.0
1,239,787	-				+1.3
1,239,787	-				+0.9
1,239,787	-				-0.0
1,239,895	-				-0.0
1,240,026	+				-1.0
1,240,079	+				-0.0
1,240,113	+				+1.6
1,240,212	+				-0.6
1,240,280	-				-1.0
1,240,388	+				+0.1
1,240,389	-				-1.0
1,240,389	-				-0.0
1,240,403	+				-0.0
1,240,403	+				-0.9
1,240,466	+				-0.0
1,240,466	+				-1.0
1,240,466	+				+1.5
1,240,467	-				-0.8
1,240,467	-				+0.9
1,240,538	+				-0.0
1,240,652	+				-0.0
1,240,769	-				+1.5
1,240,795	+				-0.0
1,240,795	+				-1.0
1,240,795	+				+1.0
1,240,796	-				-1.0
1,240,796	-				-0.0
1,240,796	-				+1.1
1,240,796	-				+0.1
1,240,796	-				-1.8
1,240,796	-				+0.1
1,240,796	-				-0.0
1,240,830	-				-0.0