Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0794

Experiment: Succinic Acid; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0793 and Rru_A0794 are separated by 8 nucleotidesRru_A0794 and Rru_A0795 are separated by 12 nucleotidesRru_A0795 and Rru_A0796 are separated by 39 nucleotides Rru_A0793: Rru_A0793 - Nitrogenase (NCBI), at 946,445 to 947,845 _A0793 Rru_A0794: Rru_A0794 - Nitrogenase (NCBI), at 947,854 to 949,389 _A0794 Rru_A0795: Rru_A0795 - Nitrogenase iron protein (NCBI), at 949,402 to 950,277 _A0795 Rru_A0796: Rru_A0796 - Radical SAM (NCBI), at 950,317 to 951,312 _A0796 Position (kb) 947 948 949 950Strain fitness (log2 ratio) -1 0 1 2at 946.884 kb on + strand, within Rru_A0793at 946.885 kb on - strand, within Rru_A0793at 946.893 kb on + strand, within Rru_A0793at 946.894 kb on - strand, within Rru_A0793at 946.917 kb on + strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.918 kb on - strand, within Rru_A0793at 946.926 kb on + strand, within Rru_A0793at 946.927 kb on - strand, within Rru_A0793at 947.065 kb on - strand, within Rru_A0793at 947.065 kb on - strand, within Rru_A0793at 947.122 kb on + strand, within Rru_A0793at 947.185 kb on + strand, within Rru_A0793at 947.287 kb on + strand, within Rru_A0793at 947.288 kb on - strand, within Rru_A0793at 947.288 kb on - strand, within Rru_A0793at 947.381 kb on - strand, within Rru_A0793at 947.381 kb on - strand, within Rru_A0793at 947.381 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.410 kb on - strand, within Rru_A0793at 947.483 kb on - strand, within Rru_A0793at 947.644 kb on + strand, within Rru_A0793at 947.645 kb on - strand, within Rru_A0793at 947.645 kb on - strand, within Rru_A0793at 947.646 kb on + strand, within Rru_A0793at 947.646 kb on + strand, within Rru_A0793at 947.647 kb on - strand, within Rru_A0793at 947.647 kb on - strand, within Rru_A0793at 947.647 kb on - strand, within Rru_A0793at 947.755 kb on + strandat 947.755 kb on + strandat 947.755 kb on + strandat 947.756 kb on - strandat 947.756 kb on - strandat 947.756 kb on - strandat 947.756 kb on - strandat 947.757 kb on + strandat 947.757 kb on + strandat 947.758 kb on - strandat 947.758 kb on - strandat 947.758 kb on - strandat 948.039 kb on + strand, within Rru_A0794at 948.039 kb on + strand, within Rru_A0794at 948.039 kb on + strand, within Rru_A0794at 948.149 kb on + strand, within Rru_A0794at 948.150 kb on - strand, within Rru_A0794at 948.200 kb on + strand, within Rru_A0794at 948.201 kb on - strand, within Rru_A0794at 948.201 kb on - strand, within Rru_A0794at 948.251 kb on + strand, within Rru_A0794at 948.252 kb on - strand, within Rru_A0794at 948.252 kb on - strand, within Rru_A0794at 948.332 kb on + strand, within Rru_A0794at 948.332 kb on + strand, within Rru_A0794at 948.333 kb on - strand, within Rru_A0794at 948.428 kb on + strand, within Rru_A0794at 948.428 kb on + strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.429 kb on - strand, within Rru_A0794at 948.503 kb on + strand, within Rru_A0794at 948.563 kb on + strand, within Rru_A0794at 948.563 kb on + strand, within Rru_A0794at 948.564 kb on - strand, within Rru_A0794at 948.564 kb on - strand, within Rru_A0794at 948.579 kb on - strand, within Rru_A0794at 948.650 kb on + strand, within Rru_A0794at 948.650 kb on + strand, within Rru_A0794at 948.651 kb on - strand, within Rru_A0794at 948.651 kb on - strand, within Rru_A0794at 948.841 kb on + strand, within Rru_A0794at 948.842 kb on - strand, within Rru_A0794at 949.001 kb on + strand, within Rru_A0794at 949.001 kb on + strand, within Rru_A0794at 949.095 kb on + strand, within Rru_A0794at 949.095 kb on + strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.096 kb on - strand, within Rru_A0794at 949.097 kb on + strand, within Rru_A0794at 949.097 kb on + strand, within Rru_A0794at 949.098 kb on - strand, within Rru_A0794at 949.098 kb on - strand, within Rru_A0794at 949.525 kb on - strand, within Rru_A0795at 949.525 kb on - strand, within Rru_A0795at 949.525 kb on - strand, within Rru_A0795at 949.556 kb on + strand, within Rru_A0795at 949.557 kb on - strand, within Rru_A0795at 949.557 kb on - strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.646 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.763 kb on + strand, within Rru_A0795at 949.764 kb on - strand, within Rru_A0795at 949.799 kb on + strand, within Rru_A0795at 949.800 kb on - strand, within Rru_A0795at 949.913 kb on + strand, within Rru_A0795at 949.913 kb on + strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 949.914 kb on - strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.027 kb on + strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.028 kb on - strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.111 kb on + strand, within Rru_A0795at 950.112 kb on - strand, within Rru_A0795at 950.112 kb on - strand, within Rru_A0795at 950.178 kb on - strand, within Rru_A0795at 950.178 kb on - strand, within Rru_A0795at 950.205 kb on + strandat 950.206 kb on - strandat 950.246 kb on + strandat 950.246 kb on + strandat 950.357 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 38 uM
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946,884 + Rru_A0793 0.31 +0.5
946,885 - Rru_A0793 0.31 -0.0
946,893 + Rru_A0793 0.32 +0.9
946,894 - Rru_A0793 0.32 +0.0
946,917 + Rru_A0793 0.34 +0.6
946,918 - Rru_A0793 0.34 +0.4
946,918 - Rru_A0793 0.34 -0.0
946,918 - Rru_A0793 0.34 +0.8
946,926 + Rru_A0793 0.34 +1.0
946,927 - Rru_A0793 0.34 -0.5
947,065 - Rru_A0793 0.44 +0.6
947,065 - Rru_A0793 0.44 -0.0
947,122 + Rru_A0793 0.48 +2.0
947,185 + Rru_A0793 0.53 +1.1
947,287 + Rru_A0793 0.60 +1.1
947,288 - Rru_A0793 0.60 +0.3
947,288 - Rru_A0793 0.60 -0.0
947,381 - Rru_A0793 0.67 -0.1
947,381 - Rru_A0793 0.67 -0.0
947,381 - Rru_A0793 0.67 +0.7
947,410 - Rru_A0793 0.69 -0.0
947,410 - Rru_A0793 0.69 -0.0
947,410 - Rru_A0793 0.69 +0.3
947,410 - Rru_A0793 0.69 +0.5
947,483 - Rru_A0793 0.74 -0.0
947,644 + Rru_A0793 0.86 +1.3
947,645 - Rru_A0793 0.86 +1.1
947,645 - Rru_A0793 0.86 +1.5
947,646 + Rru_A0793 0.86 +0.2
947,646 + Rru_A0793 0.86 +1.1
947,647 - Rru_A0793 0.86 -1.0
947,647 - Rru_A0793 0.86 +0.7
947,647 - Rru_A0793 0.86 -0.0
947,755 + -0.0
947,755 + +1.1
947,755 + -0.0
947,756 - +0.2
947,756 - +1.2
947,756 - -0.0
947,756 - -0.0
947,757 + -0.0
947,757 + +2.6
947,758 - +0.4
947,758 - -0.0
947,758 - +2.3
948,039 + Rru_A0794 0.12 +0.4
948,039 + Rru_A0794 0.12 +0.8
948,039 + Rru_A0794 0.12 +0.8
948,149 + Rru_A0794 0.19 -0.0
948,150 - Rru_A0794 0.19 -0.0
948,200 + Rru_A0794 0.23 -0.0
948,201 - Rru_A0794 0.23 +0.6
948,201 - Rru_A0794 0.23 -0.0
948,251 + Rru_A0794 0.26 +1.2
948,252 - Rru_A0794 0.26 +1.0
948,252 - Rru_A0794 0.26 +0.1
948,332 + Rru_A0794 0.31 -0.0
948,332 + Rru_A0794 0.31 +0.4
948,333 - Rru_A0794 0.31 -0.2
948,428 + Rru_A0794 0.37 -0.0
948,428 + Rru_A0794 0.37 -0.0
948,429 - Rru_A0794 0.37 +1.2
948,429 - Rru_A0794 0.37 -0.2
948,429 - Rru_A0794 0.37 +0.6
948,503 + Rru_A0794 0.42 +0.5
948,563 + Rru_A0794 0.46 -0.0
948,563 + Rru_A0794 0.46 +0.2
948,564 - Rru_A0794 0.46 -0.0
948,564 - Rru_A0794 0.46 -0.0
948,579 - Rru_A0794 0.47 +0.9
948,650 + Rru_A0794 0.52 +0.1
948,650 + Rru_A0794 0.52 +0.1
948,651 - Rru_A0794 0.52 +0.6
948,651 - Rru_A0794 0.52 -0.0
948,841 + Rru_A0794 0.64 +0.4
948,842 - Rru_A0794 0.64 +0.1
949,001 + Rru_A0794 0.75 +1.1
949,001 + Rru_A0794 0.75 +1.1
949,095 + Rru_A0794 0.81 +1.5
949,095 + Rru_A0794 0.81 +0.8
949,096 - Rru_A0794 0.81 -0.0
949,096 - Rru_A0794 0.81 -0.0
949,096 - Rru_A0794 0.81 -0.6
949,096 - Rru_A0794 0.81 -0.0
949,096 - Rru_A0794 0.81 -0.0
949,097 + Rru_A0794 0.81 -0.0
949,097 + Rru_A0794 0.81 +0.5
949,098 - Rru_A0794 0.81 -0.7
949,098 - Rru_A0794 0.81 +0.4
949,525 - Rru_A0795 0.14 -0.0
949,525 - Rru_A0795 0.14 +0.1
949,525 - Rru_A0795 0.14 -0.0
949,556 + Rru_A0795 0.18 -0.0
949,557 - Rru_A0795 0.18 +0.7
949,557 - Rru_A0795 0.18 +1.2
949,646 + Rru_A0795 0.28 +0.8
949,646 + Rru_A0795 0.28 -0.0
949,646 + Rru_A0795 0.28 +0.5
949,646 + Rru_A0795 0.28 -0.0
949,646 + Rru_A0795 0.28 +1.3
949,646 + Rru_A0795 0.28 +0.6
949,763 + Rru_A0795 0.41 +1.1
949,763 + Rru_A0795 0.41 -0.0
949,763 + Rru_A0795 0.41 +1.2
949,764 - Rru_A0795 0.41 -1.6
949,799 + Rru_A0795 0.45 +1.6
949,800 - Rru_A0795 0.45 -1.0
949,913 + Rru_A0795 0.58 +1.1
949,913 + Rru_A0795 0.58 +0.4
949,914 - Rru_A0795 0.58 +0.7
949,914 - Rru_A0795 0.58 -0.0
949,914 - Rru_A0795 0.58 +1.7
950,027 + Rru_A0795 0.71 +0.9
950,027 + Rru_A0795 0.71 -0.0
950,027 + Rru_A0795 0.71 -0.0
950,028 - Rru_A0795 0.71 +1.0
950,028 - Rru_A0795 0.71 -0.0
950,028 - Rru_A0795 0.71 -0.0
950,028 - Rru_A0795 0.71 +0.6
950,028 - Rru_A0795 0.71 +0.4
950,028 - Rru_A0795 0.71 +0.3
950,028 - Rru_A0795 0.71 -0.0
950,028 - Rru_A0795 0.71 -0.0
950,028 - Rru_A0795 0.71 -0.0
950,028 - Rru_A0795 0.71 +0.4
950,111 + Rru_A0795 0.81 -0.0
950,111 + Rru_A0795 0.81 +0.9
950,111 + Rru_A0795 0.81 -0.0
950,111 + Rru_A0795 0.81 +1.0
950,111 + Rru_A0795 0.81 +1.0
950,111 + Rru_A0795 0.81 -1.0
950,112 - Rru_A0795 0.81 +1.5
950,112 - Rru_A0795 0.81 -0.0
950,178 - Rru_A0795 0.89 -0.0
950,178 - Rru_A0795 0.89 -0.0
950,205 + +0.8
950,206 - -0.0
950,246 + -0.0
950,246 + +0.8
950,357 + -0.0

Or see this region's nucleotide sequence