Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0566

Experiment: Succinic Acid; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0564 and Rru_A0565 are separated by 67 nucleotidesRru_A0565 and Rru_A0566 are separated by 185 nucleotidesRru_A0566 and Rru_A0567 are separated by 278 nucleotides Rru_A0564: Rru_A0564 - hypothetical protein (NCBI), at 667,041 to 668,165 _A0564 Rru_A0565: Rru_A0565 - hypothetical protein (NCBI), at 668,233 to 668,568 _A0565 Rru_A0566: Rru_A0566 - hypothetical protein (NCBI), at 668,754 to 672,314 _A0566 Rru_A0567: Rru_A0567 - Peptidase U62, modulator of DNA gyrase (NCBI), at 672,593 to 674,035 _A0567 Position (kb) 668 669 670 671 672 673Strain fitness (log2 ratio) -1 0 1 2 3at 667.869 kb on + strand, within Rru_A0564at 667.940 kb on + strand, within Rru_A0564at 668.234 kb on + strandat 668.234 kb on + strandat 668.234 kb on + strandat 668.234 kb on + strandat 668.234 kb on + strandat 668.235 kb on - strandat 668.235 kb on - strandat 668.256 kb on + strandat 668.257 kb on - strandat 668.703 kb on - strandat 668.703 kb on - strandat 669.349 kb on + strand, within Rru_A0566at 669.349 kb on + strand, within Rru_A0566at 669.350 kb on - strand, within Rru_A0566at 669.361 kb on + strand, within Rru_A0566at 669.361 kb on + strand, within Rru_A0566at 669.361 kb on + strand, within Rru_A0566at 669.676 kb on + strand, within Rru_A0566at 669.677 kb on - strand, within Rru_A0566at 669.908 kb on - strand, within Rru_A0566at 669.908 kb on - strand, within Rru_A0566at 669.908 kb on - strand, within Rru_A0566at 669.908 kb on - strand, within Rru_A0566at 669.908 kb on - strand, within Rru_A0566at 670.042 kb on + strand, within Rru_A0566at 670.189 kb on + strand, within Rru_A0566at 670.235 kb on + strand, within Rru_A0566at 670.235 kb on + strand, within Rru_A0566at 670.235 kb on + strand, within Rru_A0566at 670.235 kb on + strand, within Rru_A0566at 670.236 kb on - strand, within Rru_A0566at 670.236 kb on - strand, within Rru_A0566at 670.313 kb on - strand, within Rru_A0566at 670.315 kb on + strand, within Rru_A0566at 670.315 kb on + strand, within Rru_A0566at 670.316 kb on - strand, within Rru_A0566at 670.538 kb on - strand, within Rru_A0566at 670.540 kb on + strand, within Rru_A0566at 670.540 kb on + strand, within Rru_A0566at 670.541 kb on - strand, within Rru_A0566at 670.541 kb on - strand, within Rru_A0566at 670.541 kb on - strand, within Rru_A0566at 670.541 kb on - strand, within Rru_A0566at 670.557 kb on - strand, within Rru_A0566at 670.900 kb on + strand, within Rru_A0566at 671.094 kb on + strand, within Rru_A0566at 671.203 kb on + strand, within Rru_A0566at 671.204 kb on - strand, within Rru_A0566at 671.204 kb on - strand, within Rru_A0566at 671.204 kb on - strand, within Rru_A0566at 671.204 kb on - strand, within Rru_A0566at 671.204 kb on - strand, within Rru_A0566at 671.204 kb on - strand, within Rru_A0566at 671.204 kb on - strand, within Rru_A0566at 671.296 kb on + strand, within Rru_A0566at 671.296 kb on + strand, within Rru_A0566at 671.296 kb on + strand, within Rru_A0566at 671.297 kb on - strand, within Rru_A0566at 671.358 kb on - strand, within Rru_A0566at 671.542 kb on + strand, within Rru_A0566at 671.542 kb on + strand, within Rru_A0566at 671.542 kb on + strand, within Rru_A0566at 671.543 kb on - strand, within Rru_A0566at 671.543 kb on - strand, within Rru_A0566at 671.543 kb on - strand, within Rru_A0566at 671.543 kb on - strand, within Rru_A0566at 671.552 kb on - strand, within Rru_A0566at 671.552 kb on - strand, within Rru_A0566at 671.552 kb on - strand, within Rru_A0566at 671.552 kb on - strand, within Rru_A0566at 671.643 kb on + strand, within Rru_A0566at 671.644 kb on - strand, within Rru_A0566at 671.695 kb on + strand, within Rru_A0566at 671.696 kb on - strand, within Rru_A0566at 671.825 kb on + strand, within Rru_A0566at 671.951 kb on + strand, within Rru_A0566at 672.232 kb on + strandat 672.232 kb on + strandat 672.233 kb on - strandat 672.331 kb on + strandat 672.332 kb on - strandat 672.332 kb on - strandat 672.400 kb on + strandat 672.531 kb on + strandat 672.531 kb on + strandat 672.531 kb on + strandat 672.532 kb on - strandat 672.532 kb on - strandat 672.716 kb on + strandat 672.776 kb on - strand, within Rru_A0567at 672.947 kb on + strand, within Rru_A0567at 672.947 kb on + strand, within Rru_A0567at 672.947 kb on + strand, within Rru_A0567at 672.947 kb on + strand, within Rru_A0567at 672.947 kb on + strand, within Rru_A0567at 672.948 kb on - strand, within Rru_A0567

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 38 uM
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667,869 + Rru_A0564 0.74 +1.1
667,940 + Rru_A0564 0.80 -1.0
668,234 + +0.0
668,234 + +0.0
668,234 + +0.0
668,234 + -0.2
668,234 + +0.6
668,235 - +0.0
668,235 - +1.0
668,256 + +1.4
668,257 - +0.5
668,703 - +2.0
668,703 - +0.5
669,349 + Rru_A0566 0.17 +2.1
669,349 + Rru_A0566 0.17 +0.0
669,350 - Rru_A0566 0.17 +1.3
669,361 + Rru_A0566 0.17 +0.0
669,361 + Rru_A0566 0.17 +1.0
669,361 + Rru_A0566 0.17 +2.2
669,676 + Rru_A0566 0.26 +1.6
669,677 - Rru_A0566 0.26 +1.5
669,908 - Rru_A0566 0.32 +1.3
669,908 - Rru_A0566 0.32 +0.0
669,908 - Rru_A0566 0.32 +2.2
669,908 - Rru_A0566 0.32 +0.0
669,908 - Rru_A0566 0.32 +1.4
670,042 + Rru_A0566 0.36 +0.0
670,189 + Rru_A0566 0.40 +1.8
670,235 + Rru_A0566 0.42 +0.9
670,235 + Rru_A0566 0.42 +0.4
670,235 + Rru_A0566 0.42 +1.9
670,235 + Rru_A0566 0.42 +0.2
670,236 - Rru_A0566 0.42 +1.5
670,236 - Rru_A0566 0.42 +0.0
670,313 - Rru_A0566 0.44 +0.0
670,315 + Rru_A0566 0.44 +0.6
670,315 + Rru_A0566 0.44 +0.0
670,316 - Rru_A0566 0.44 +0.0
670,538 - Rru_A0566 0.50 +0.3
670,540 + Rru_A0566 0.50 +0.0
670,540 + Rru_A0566 0.50 +0.0
670,541 - Rru_A0566 0.50 +1.4
670,541 - Rru_A0566 0.50 +0.0
670,541 - Rru_A0566 0.50 +0.0
670,541 - Rru_A0566 0.50 -0.4
670,557 - Rru_A0566 0.51 +1.1
670,900 + Rru_A0566 0.60 +1.9
671,094 + Rru_A0566 0.66 +0.0
671,203 + Rru_A0566 0.69 +0.0
671,204 - Rru_A0566 0.69 +0.0
671,204 - Rru_A0566 0.69 +1.8
671,204 - Rru_A0566 0.69 +0.0
671,204 - Rru_A0566 0.69 -1.0
671,204 - Rru_A0566 0.69 +1.4
671,204 - Rru_A0566 0.69 +0.0
671,204 - Rru_A0566 0.69 +1.2
671,296 + Rru_A0566 0.71 +0.0
671,296 + Rru_A0566 0.71 +0.0
671,296 + Rru_A0566 0.71 +1.5
671,297 - Rru_A0566 0.71 +1.6
671,358 - Rru_A0566 0.73 +1.8
671,542 + Rru_A0566 0.78 +1.2
671,542 + Rru_A0566 0.78 +0.0
671,542 + Rru_A0566 0.78 +1.5
671,543 - Rru_A0566 0.78 +0.0
671,543 - Rru_A0566 0.78 +0.7
671,543 - Rru_A0566 0.78 +1.5
671,543 - Rru_A0566 0.78 -1.0
671,552 - Rru_A0566 0.79 -1.0
671,552 - Rru_A0566 0.79 +1.6
671,552 - Rru_A0566 0.79 +1.6
671,552 - Rru_A0566 0.79 +1.2
671,643 + Rru_A0566 0.81 +0.0
671,644 - Rru_A0566 0.81 +1.6
671,695 + Rru_A0566 0.83 +0.0
671,696 - Rru_A0566 0.83 +0.0
671,825 + Rru_A0566 0.86 +0.0
671,951 + Rru_A0566 0.90 +1.3
672,232 + +1.2
672,232 + +1.8
672,233 - +2.1
672,331 + +0.0
672,332 - +0.6
672,332 - +1.3
672,400 + +1.3
672,531 + +1.2
672,531 + +1.6
672,531 + +0.0
672,532 - +0.0
672,532 - +0.0
672,716 + +0.0
672,776 - Rru_A0567 0.13 +0.0
672,947 + Rru_A0567 0.25 +0.0
672,947 + Rru_A0567 0.25 +2.8
672,947 + Rru_A0567 0.25 +0.8
672,947 + Rru_A0567 0.25 +0.0
672,947 + Rru_A0567 0.25 +0.0
672,948 - Rru_A0567 0.25 -0.2

Or see this region's nucleotide sequence