Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0562

Experiment: Succinic Acid; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0561 and Rru_A0562 are separated by 61 nucleotidesRru_A0562 and Rru_A0563 overlap by 4 nucleotides Rru_A0561: Rru_A0561 - Cytochrome bd ubiquinol oxidase, subunit II (NCBI), at 663,607 to 664,608 _A0561 Rru_A0562: Rru_A0562 - Peptidase S1 and S6, chymotrypsin/Hap (NCBI), at 664,670 to 665,590 _A0562 Rru_A0563: Rru_A0563 - Twin-arginine translocation pathway signal (NCBI), at 665,587 to 666,852 _A0563 Position (kb) 664 665 666Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 663.735 kb on + strand, within Rru_A0561at 663.736 kb on - strand, within Rru_A0561at 663.832 kb on + strand, within Rru_A0561at 663.832 kb on + strand, within Rru_A0561at 663.832 kb on + strand, within Rru_A0561at 663.856 kb on + strand, within Rru_A0561at 663.856 kb on + strand, within Rru_A0561at 663.856 kb on + strand, within Rru_A0561at 663.857 kb on - strand, within Rru_A0561at 663.857 kb on - strand, within Rru_A0561at 663.857 kb on - strand, within Rru_A0561at 663.857 kb on - strand, within Rru_A0561at 664.114 kb on + strand, within Rru_A0561at 664.116 kb on + strand, within Rru_A0561at 664.116 kb on + strand, within Rru_A0561at 664.116 kb on + strand, within Rru_A0561at 664.117 kb on - strand, within Rru_A0561at 664.117 kb on - strand, within Rru_A0561at 664.411 kb on + strand, within Rru_A0561at 664.411 kb on + strand, within Rru_A0561at 664.412 kb on - strand, within Rru_A0561at 664.412 kb on - strand, within Rru_A0561at 664.435 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.441 kb on + strand, within Rru_A0561at 664.442 kb on - strand, within Rru_A0561at 664.442 kb on - strand, within Rru_A0561at 664.442 kb on - strand, within Rru_A0561at 664.442 kb on - strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.443 kb on + strand, within Rru_A0561at 664.444 kb on - strand, within Rru_A0561at 664.546 kb on + strandat 664.555 kb on + strandat 664.561 kb on + strandat 664.561 kb on + strandat 664.561 kb on + strandat 664.671 kb on + strandat 664.672 kb on - strandat 664.827 kb on + strand, within Rru_A0562at 665.067 kb on + strand, within Rru_A0562at 665.781 kb on + strand, within Rru_A0563at 665.856 kb on + strand, within Rru_A0563at 665.856 kb on + strand, within Rru_A0563at 665.857 kb on - strand, within Rru_A0563at 665.858 kb on + strand, within Rru_A0563at 665.858 kb on + strand, within Rru_A0563at 665.859 kb on - strand, within Rru_A0563at 665.859 kb on - strand, within Rru_A0563at 665.859 kb on - strand, within Rru_A0563at 665.948 kb on + strand, within Rru_A0563at 665.948 kb on + strand, within Rru_A0563at 665.949 kb on - strand, within Rru_A0563at 666.008 kb on + strand, within Rru_A0563at 666.176 kb on + strand, within Rru_A0563at 666.177 kb on - strand, within Rru_A0563at 666.177 kb on - strand, within Rru_A0563at 666.272 kb on + strand, within Rru_A0563at 666.272 kb on + strand, within Rru_A0563at 666.272 kb on + strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.273 kb on - strand, within Rru_A0563at 666.308 kb on - strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.345 kb on + strand, within Rru_A0563at 666.346 kb on - strand, within Rru_A0563at 666.346 kb on - strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.347 kb on + strand, within Rru_A0563at 666.348 kb on - strand, within Rru_A0563at 666.348 kb on - strand, within Rru_A0563at 666.348 kb on - strand, within Rru_A0563at 666.368 kb on + strand, within Rru_A0563at 666.368 kb on + strand, within Rru_A0563at 666.368 kb on + strand, within Rru_A0563at 666.369 kb on - strand, within Rru_A0563at 666.369 kb on - strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.372 kb on + strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.373 kb on - strand, within Rru_A0563at 666.374 kb on + strand, within Rru_A0563

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid; Light intensity 38 uM
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663,735 + Rru_A0561 0.13 +0.0
663,736 - Rru_A0561 0.13 +0.1
663,832 + Rru_A0561 0.22 +0.0
663,832 + Rru_A0561 0.22 +0.4
663,832 + Rru_A0561 0.22 +0.0
663,856 + Rru_A0561 0.25 -0.5
663,856 + Rru_A0561 0.25 +0.6
663,856 + Rru_A0561 0.25 +0.0
663,857 - Rru_A0561 0.25 +0.8
663,857 - Rru_A0561 0.25 +0.0
663,857 - Rru_A0561 0.25 +0.0
663,857 - Rru_A0561 0.25 +0.0
664,114 + Rru_A0561 0.51 -1.6
664,116 + Rru_A0561 0.51 +0.0
664,116 + Rru_A0561 0.51 +0.0
664,116 + Rru_A0561 0.51 -1.0
664,117 - Rru_A0561 0.51 +0.0
664,117 - Rru_A0561 0.51 +0.3
664,411 + Rru_A0561 0.80 -1.0
664,411 + Rru_A0561 0.80 -0.1
664,412 - Rru_A0561 0.80 +0.0
664,412 - Rru_A0561 0.80 -0.2
664,435 + Rru_A0561 0.83 +0.1
664,441 + Rru_A0561 0.83 +0.0
664,441 + Rru_A0561 0.83 +0.0
664,441 + Rru_A0561 0.83 +3.3
664,441 + Rru_A0561 0.83 +0.0
664,441 + Rru_A0561 0.83 -0.1
664,441 + Rru_A0561 0.83 +0.0
664,441 + Rru_A0561 0.83 +1.1
664,441 + Rru_A0561 0.83 +1.2
664,442 - Rru_A0561 0.83 +0.0
664,442 - Rru_A0561 0.83 +0.0
664,442 - Rru_A0561 0.83 +0.0
664,442 - Rru_A0561 0.83 -1.0
664,443 + Rru_A0561 0.83 +0.0
664,443 + Rru_A0561 0.83 -1.0
664,443 + Rru_A0561 0.83 +0.0
664,443 + Rru_A0561 0.83 -1.0
664,443 + Rru_A0561 0.83 +0.3
664,443 + Rru_A0561 0.83 -1.0
664,444 - Rru_A0561 0.84 +0.3
664,546 + -0.5
664,555 + +0.6
664,561 + +0.4
664,561 + +0.0
664,561 + +0.0
664,671 + +0.0
664,672 - +0.7
664,827 + Rru_A0562 0.17 +0.0
665,067 + Rru_A0562 0.43 -0.2
665,781 + Rru_A0563 0.15 +0.0
665,856 + Rru_A0563 0.21 +0.9
665,856 + Rru_A0563 0.21 +2.3
665,857 - Rru_A0563 0.21 +1.0
665,858 + Rru_A0563 0.21 +0.7
665,858 + Rru_A0563 0.21 +0.0
665,859 - Rru_A0563 0.21 +0.2
665,859 - Rru_A0563 0.21 +0.7
665,859 - Rru_A0563 0.21 +0.2
665,948 + Rru_A0563 0.29 +0.7
665,948 + Rru_A0563 0.29 +0.3
665,949 - Rru_A0563 0.29 +1.4
666,008 + Rru_A0563 0.33 -0.6
666,176 + Rru_A0563 0.47 +0.6
666,177 - Rru_A0563 0.47 +0.9
666,177 - Rru_A0563 0.47 +1.0
666,272 + Rru_A0563 0.54 +0.2
666,272 + Rru_A0563 0.54 +0.7
666,272 + Rru_A0563 0.54 +0.0
666,273 - Rru_A0563 0.54 -1.0
666,273 - Rru_A0563 0.54 -0.0
666,273 - Rru_A0563 0.54 +0.0
666,273 - Rru_A0563 0.54 -2.8
666,308 - Rru_A0563 0.57 +0.7
666,345 + Rru_A0563 0.60 +0.0
666,345 + Rru_A0563 0.60 -0.3
666,345 + Rru_A0563 0.60 +0.0
666,345 + Rru_A0563 0.60 +0.4
666,346 - Rru_A0563 0.60 -0.9
666,346 - Rru_A0563 0.60 +0.8
666,347 + Rru_A0563 0.60 +0.0
666,347 + Rru_A0563 0.60 +0.0
666,347 + Rru_A0563 0.60 +0.0
666,347 + Rru_A0563 0.60 -0.2
666,347 + Rru_A0563 0.60 +0.2
666,348 - Rru_A0563 0.60 +0.4
666,348 - Rru_A0563 0.60 +0.8
666,348 - Rru_A0563 0.60 +0.7
666,368 + Rru_A0563 0.62 +0.0
666,368 + Rru_A0563 0.62 +0.0
666,368 + Rru_A0563 0.62 +0.8
666,369 - Rru_A0563 0.62 +0.0
666,369 - Rru_A0563 0.62 -1.0
666,372 + Rru_A0563 0.62 +1.0
666,372 + Rru_A0563 0.62 +0.0
666,372 + Rru_A0563 0.62 +0.0
666,372 + Rru_A0563 0.62 +0.0
666,372 + Rru_A0563 0.62 +0.8
666,373 - Rru_A0563 0.62 +0.0
666,373 - Rru_A0563 0.62 -0.7
666,373 - Rru_A0563 0.62 +0.0
666,373 - Rru_A0563 0.62 +0.1
666,373 - Rru_A0563 0.62 -0.4
666,373 - Rru_A0563 0.62 +0.0
666,373 - Rru_A0563 0.62 -0.3
666,374 + Rru_A0563 0.62 +0.4

Or see this region's nucleotide sequence